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reactome
logic-network-generator
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specs/049: shared-intermediate pools and carrier_loops.csv (draft; ar…
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specs/049: shared-intermediate pools and carrier_loops.csv (draft; arms pending)
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specs/048: pathogens.csv; homodimer-aware output binding (LNG_BIND_ST…
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specs/048: pathogens.csv; homodimer-aware output binding (LNG_BIND_STOICH)
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Variant complex nodes, on by default (deltasignal specs/046) (#109)
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Variant complex nodes, on by default (deltasignal specs/046)
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Variant complex nodes, on by default (deltasignal specs/046)
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Bump virtualenv from 21.3.0 to 21.7.13
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Bump urllib3 from 2.7.0 to 2.8.0
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LNG_CAP_POOLS on by default (deltasignal specs/045); CAPPED_IDS cache…
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F7: a set inside a root complex is one node fed by its members (OR), …
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LNG_CAP_POOLS on by default (deltasignal specs/045); fix CAPPED_IDS cache dependence (F6)
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F7: a set inside a root complex is one node fed by its members (OR), not every member a required input (deltasignal specs/044)
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Derived boundary edges go to boundary_edges.csv; add containment_stru…
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Derived boundary edges go to boundary_edges.csv; add containment_structure.csv (deltasignal specs/044)
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Code review 2026-10-02: fail loudly instead of shipping a silently wr…
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pools: orient by the active form (specs/039 amendments 6+7; made_from…
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pools: orient by the active form (specs/039 amendments 6+7; made_from default)
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