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Pull requests: scverse/anndata

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Pull requests list

fix: preserve masked array in view skip-gpu-ci
#2582 opened Jul 31, 2026 by flying-sheep Member • 2/2 Loading…
3 tasks
0.13.3
1
build: sync with cookiecutter-scverse template, adopt mypy dev process skip-gpu-ci
#2577 opened Jul 29, 2026 by Zethson Member • 1/2 Loading… 0.14.0
66
fix: suggest store class when reading a packed zarr store by path
#2571 opened Jul 26, 2026 by JOhnsonKC201 Loading…
8 of 9 tasks
1
1
fix: replace H5AD only after successful write skip-gpu-ci
#2570 opened Jul 24, 2026 by stanbot8 Loading… 0.13.3
1
5
fix: add element paths to concat errors
#2568 opened Jul 22, 2026 by stanbot8 Loading…
1
1
feat: honor use_sparse_array_on_read in lazy sparse reads
#2566 opened Jul 21, 2026 by Kayaba-Attribution Loading…
1 of 2 tasks
1
Fix lazy dataframe reindexing with unloaded annotation indexes
#2565 opened Jul 21, 2026 by ShreyanshGoyal Loading…
8 of 9 tasks
1
1
Update template to v0.8.0
#2563 opened Jul 17, 2026 by scverse-bot Loading…
fix: fall back to asarray when DLPack export of a read-only index fails; buffer error fix
#2561 opened Jul 16, 2026 by amalia-k510 Contributor • Draft
1
fix(concat_on_disk): retain aligned-mapping keys under join="outer" skip-gpu-ci
#2558 opened Jul 15, 2026 by alejandro-publius Loading…
2 tasks done
0.14.0
1
3
chore: try out new zarr codec pipeline
#2529 opened Jul 3, 2026 by ilan-gold Contributor • Draft
3 tasks
1
test(backed): add regression for filename=None after read_h5ad
#2517 opened Jun 27, 2026 by SID-6921 Loading…
2
feat: make obs/var backend-agnostic with a DataFrameLike contract
#2516 opened Jun 26, 2026 by srivarra Contributor Loading…
3 of 6 tasks
1
1
perf: speed up backed sparse integer indexing
#2506 opened Jun 17, 2026 by tippered1-debug Loading…
1 of 3 tasks
2
perf: avoid redundant sorting in h5py indexing skip-gpu-ci
#2496 opened Jun 13, 2026 by tippered1-debug Loading…
1 of 3 tasks
0.13.3
6
implemented multi-threading for h5ad file reads, substantial speed up (rivals zarr + zarrs)
#2471 opened May 28, 2026 by zboldyga Loading…
2 tasks
6
test: add Dask chunk grid benchmark scaffold performance 🐌 skip-gpu-ci type: dask array
#2465 opened May 21, 2026 by ehsanestaji • Draft 0.13.3
4
fix: load raw X when leaving backed mode skip-gpu-ci
#2460 opened May 19, 2026 by ehsanestaji Loading…
2 of 3 tasks
0.13.3
1
2
feat: aligned_axis_key_join for on-axis key joining skip-gpu-ci
#2416 opened May 3, 2026 by Ekin-Kahraman Loading… 0.14.0
1
11
feat(utils): expose STANDARD_SECTIONS as the canonical section order
#2402 opened Apr 21, 2026 by katosh Contributor Loading…
3 tasks done
1
1
Removed scheduler from da.store as this works regardless of scheduler
#2376 opened Mar 25, 2026 by joshua-gould Contributor Loading…
1
Enable write to existing zarr store
#2366 opened Mar 16, 2026 by joshua-gould Contributor Loading…
2
Replace use_cuda with device parameter in AnnLoader
#2360 opened Mar 9, 2026 by LiudengZhang Contributor Loading…
4 tasks done
7
feat: "backed" mode for read_lazy
#2357 opened Feb 27, 2026 by ilan-gold Contributor • Draft
8 tasks
1
1
feat: mlx compat
#2334 opened Feb 6, 2026 by ilan-gold Contributor • Draft
2 of 5 tasks
0.14.0
1
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