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Explain why whole-contig CRAM reference lookup failed (#998) (#1793)
Build and Test
#565:
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Rename recently added CRAM tests to the house naming convention (#1794)
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Rename recently added CRAM tests to the house naming convention
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Rename recently added CRAM tests to the house naming convention
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Explain why whole-contig CRAM reference lookup failed
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#561:
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tf_fix_cram_998
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Let CRAMContainerStreamWriter callers keep ownership of their stream …
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Publish CRAM reference base cache atomically (#1643) (#1792)
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Fail clearly when a CRAM query needs to seek but cannot (#426) (#1791)
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Let CRAMContainerStreamWriter callers keep ownership of their stream
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Explain why CRAM reference base lookup failed (#1732) (#1790)
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Publish CRAM reference base cache atomically
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#555:
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tf_fix_cram_1643
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Fail clearly when a CRAM query needs to seek but cannot
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#554:
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Explain why CRAM reference base lookup failed
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#553:
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Let CRAMContainerStreamWriter callers keep ownership of their stream
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Implementation of a SAMRecord comparator that matches samtools' query…
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#551:
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Implementation of a SAMRecord comparator that matches samtools' queryname sort order.
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#550:
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tf_sam_sortorder_natural
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Build hygiene: upgrade Gradle wrapper and build plugins (#1788)
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Build hygiene: upgrade Gradle wrapper and build plugins
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#548:
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4m 50s
build-hygiene
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Bump dependencies to current stable versions (#1787)
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Bump dependencies to current stable versions
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Remove finalize() and other deprecated Java usages (supersedes #1698)…
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Remove finalize() and other deprecated Java usages (supersedes #1698)
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#543:
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adopt-1698-java-cleanups
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Add a sanity check that an indexed FASTA matches its .fai index (#174…
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feat: Add sanity check to indexed FASTA file
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