Huge PR to get closer to 1.0 - #9

Merged

TheBEllis merged 170 commits into

mainfrom

Sep 3, 2026

Commits on Jul 28, 2025

Initial commit for PhotonSharingData class, to help enable inter process communication of photon spectra
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a6dcb0b
Initial support for inter process communication of photon spectra in FispactProblem
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b057d07

Commits on Aug 21, 2025

cleaned up header includes
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adbfbf3
Moved bulk of interprocess communication to SyncSolutions method
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b16c1fa
reordered offset and count instantiation in readNeutronFluxFromHDF5
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8c68223
Changed fispact log naming scheme to include input file name
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85b2899
Moved Fispact include flags to EXTERNAL_FLAGS variable
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8ae01db
Remove console message
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18225f1

Commits on Aug 22, 2025

Commits on Aug 28, 2025

Commits on Aug 29, 2025

Formatted PhotonSharingData
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77e6b9f

Commits on Sep 4, 2025

Moved most HDF5 functionality into it's own namespace
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c3489f4
Significantly improved commenting in FISPACTProblem
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f1abda9

Commits on Sep 16, 2025

Fixed wrong or non const method defintions
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d421b7f
Changed string parameter definitions to FileName, and corrected wrong method parameters
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a7fe99e
Fixed init order
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3cac5ca

Commits on Oct 14, 2025

Added num_photon_bins parameter, mainly to make code more descriptive
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d4fd6ef

Commits on Jan 26, 2026

Removed relative paths for HDF5 includes
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695b370

Commits on Jan 27, 2026

changed elif statement to else
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8307e34
Removed redeclaration of atomicnumbers
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b27b2c9

Commits on Jan 28, 2026

Correctly initialised other code path
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647f364
Added example geometry to repo
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816f480
Added molar_masses h5 file, to easily read in molar masses of many isotopes
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ed20172
Added material examples to repo
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b44bb5c
Added example statepoint file to repo
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c8b7324
Fixed example input files by making path to statepoint file relative
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350e9b7
Fixed broken nuclear data paths
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6c3bfe1

Commits on Jan 30, 2026

Created new user object to input nuclear data, allowing user to easier change which nuclear data set they wish to use
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3982c5f

Commits on Feb 2, 2026

Commits on Feb 3, 2026

Added r2s examples to repo
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d45c3a2
Added geometry to r2s_test
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82f4a22

Commits on Feb 4, 2026

Commits on Feb 7, 2026

Added HDF52.0 compatible macro to test for HDF5 MPI compatibility
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2b980aa
Removed unused HDF5 C++ include
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68c87c5
Removed hdf5_cpp link in Makefile
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9554f9e

Commits on Feb 10, 2026

Commits on Feb 12, 2026

Commits on Feb 13, 2026

Updated photon sharing data to use new time dependent data
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0240741

Commits on Feb 16, 2026

Commits on Feb 18, 2026

Commits on Feb 20, 2026

Standardised testing input files
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9b6477a
Fixed xml material reader
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aa04d28
Fixed xml material reader
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ab7fd48
Removed useless print statements
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d0887a4
Fixed paths in examples to work in container
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875ffa0

Commits on Feb 23, 2026

Added PhotonSpectra class to help manage access to photon_spectra data buffer
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1d4f0e4

Commits on Feb 27, 2026

Fixed broken broadcast logic for _photon_bins
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8d9ef0c

Commits on Mar 1, 2026

Updated method names in FispactSchedule to better reflect what they do
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5206a78
Reorganised methods
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615292f

Commits on Mar 2, 2026

Commits on Mar 3, 2026

Changed all example input files to use flux_amplitude input parameter
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521c295
Set collective metadata ops when using parallel hdf5
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3d07f1c
Fixed unitialised bool _solved
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ce4cfe8
Corrected convertGammaEvToCount method
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716d5a3
Fixed wrong mass units being used in FISPACT input deck
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ace15ef
Fixed wrong unit choice when calculating atoms if using FUEL materials
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e99091d

Commits on Mar 6, 2026

Commits on Mar 9, 2026

Commits on Mar 12, 2026

Added extra parameter to convertFluxEnergy groups to make testing easier
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e88d249

Commits on Mar 13, 2026

Commits on Mar 15, 2026

Commits on Mar 17, 2026

Added getPhotonEnergyBounds and getNeutronEnergyBounds to FispactContext, changed flux summation to use accumulate
TheBEllis
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702b368

Commits on Mar 23, 2026

Commits on Mar 28, 2026

Added parameters to FispactProblem to set Fispact solver tolerances
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0ccb50a

Commits on Apr 7, 2026

gitlab commit
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86e2171

Commits on Apr 10, 2026

Added methods to Fispact interface to obtain inventory values
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37ed2e9

Commits on May 7, 2026

initial commit for tracking inventory statistics
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ecec92f

Commits on May 8, 2026

Added AuxKernels for calculating nuclide quantities
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7051eb9
updated FizzyEnums
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d17003a

Commits on May 14, 2026

Added element inventory system
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efdccf4

Commits on May 18, 2026

Commits on May 21, 2026

Added tutorial 2 input
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9f81020
Added tutorial 2 input
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c6426a6

Commits on May 22, 2026

Updated tutorials 2 3 and 4
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70d2676
added class descriptions to all classes
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2df1e8b
Removed silly print statement
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31d38f0
updated README
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4e52f80
Updated Makefile
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54ad1a3
Removed extra InputParameters defintion from inventory manager
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c5212e0
added back arrows to tutorials
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9b3fd29

Commits on May 26, 2026

removed uneccesary hdf5 include
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a40aaf8

Commits on May 27, 2026

Added FizzyCompiledSource as submodule
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697fd9c

Commits on May 28, 2026

fixed statepoint paths in tutorials
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444295f

Commits on May 29, 2026

Commits on Jun 1, 2026

Added FispactInventoryMetric example to tutorial 2
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a7b952d

Commits on Jun 15, 2026

Commits on Jul 8, 2026

Added github testing workflow
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8f31bb4

Commits on Jul 9, 2026

Added apptainer github action to workflow
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0ef7087
Updated mock fispact class for unit tests, implemented virtual methods
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14e16f8
Created stub library to stop errors when linking to normal fizzy app lib
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e9f7c9c
Added header guards to FispactFactory to enable mock builds
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7bdb632
Added definition for parallel to FispactProblem when h5 parallel is not used
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b2a0874
added fmt library to unit Makefile
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e9e67d2
Corrected container name in github workflow
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e72d266
Fixed binary name in github action
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cc69300

Commits on Jul 10, 2026

Changed mesh directory in unit test
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750405b
updated installation instructions
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5e32d17
updated README
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569e959
Updated README and docs
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c0010d5
Updated readme and installation docs
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c10980f

Commits on Jul 13, 2026

Commits on Jul 14, 2026

Added lspdlog to Makefile
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41297ce
Added new 5.1 symbol to fispact stub
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d00422f

Commits on Jul 21, 2026

Reset _total_mass in initialise
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fe95e68
Reset photon vector postprocessor to 0 each timestep
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bd0d450

Commits on Sep 2, 2026

Updated FISPACT mock to mock setXRay methods in FispactContextBase
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fa3deb8

Commits on Sep 3, 2026