This repository contains the source code and datasets used to implement datasets in NextClade. The workflow is based on the organizational structure initially developed for the Mpox virus, available at https://github.com/nextstrain/mpox/tree/master/nextclade
¹ Center for Viral Surveillance and Serological Assessment (CeVIVAS) at the Butantan Institute.
² University of São Paulo (USP).
Special thanks to the Nextstrain team for their continuous support and for providing the base workflow for Mpox, which served as an inspiration for this project.