V-GEN Lab

VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.

This repository contains the source code for the datasets used in the implementation of the dengue lineage system in NextClade. The organizational workflow was developed based on the workflow created for the m-pox virus, available at: https://github.com/nextstrain/mpox/tree/master/nextclade."

The SubmissionMode is a semi-automatic mode for handling and editing files for submission on the GISAID website.

This repository contains the result of using a semi-automatic workflow for classifying Dengue virus (DENV) based on complete genome sequences. It addresses the current limitations in sub-genotype classification, offering a more granular and standardized system compared to traditional methods.