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Pin sdrf-pipelines 0.1.6 so /health reports a stable release #5

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Merged
selvaebi merged 3 commits into from
Aug 20, 2026
+8 −5
Merged

Pin sdrf-pipelines 0.1.6 so /health reports a stable release #5

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924a11d
Pin sdrf-pipelines 0.1.6 so /health reports a stable release.
nithujohn Aug 19, 2026
6d1be10
Leave the CI workflow file unchanged.
nithujohn Aug 19, 2026
d0233c7
Update sdrf-pipelines version in requirements.txt
nithujohn Aug 20, 2026
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6 changes: 3 additions & 3 deletions Dockerfile
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Expand Up @@ -22,11 +22,11 @@ RUN groupadd -r appuser && useradd -r -g appuser appuser
# Copy requirements first for better caching
COPY requirements.txt .

# Cache-bust the pip install layer so unpinned VCS deps (sdrf-pipelines main HEAD)
# are re-fetched on every build. The CI pipeline passes the commit SHA here.
# Cache-bust the pip install layer on every CI build so dependency pins in
# requirements.txt are installed fresh. The CI pipeline passes the commit SHA here.
ARG CACHEBUST=dev

# Install Python dependencies. --upgrade ensures any unpinned VCS dep tracks main HEAD.
# Install Python dependencies.
RUN echo "cachebust=$CACHEBUST" && pip install --upgrade --no-cache-dir -r requirements.txt

# Copy application code
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7 changes: 5 additions & 2 deletions requirements.txt
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Expand Up @@ -3,8 +3,11 @@ fastapi>=0.115.0
uvicorn[standard]>=0.24.0
python-multipart>=0.0.6

# SDRF validation (use GitHub to match app imports)
git+https://github.com/bigbio/sdrf-pipelines.git
# Pin a released wheel so /health.sdrf_pipelines_version is stable and the
# image vendors the matching sdrf-templates (0.1.6: environmental medium
# required; environmental sample type no longer required). An unpinned git
# URL reports whatever tag was latest at image-build time, which is why
sdrf-pipelines==0.1.6

# Utilities
pydantic>=2.0.0
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