Phylogenetic analysis program for general data inclusing unaligned sequence data Instruction to compile poy5.1.2a Ward Wheeler Sept. 4, 2018
Citation: Wheeler, W. C., N. Lucaroni, L. Hong, L. M. Crowley, and A. Varón. 2015. POY version 5: Phylogenetic analysis using dynamic homologies under multiple optimality criteria. Cladistics 31:189-196.
Due to OCAML compiler changes only Ocaml 4.01.0 will work properly
Additional packages required: (for Ubuntu 18.04) sudo apt-get install lapack sudo apt-get install gfortran sudo apt-get install mpi (if you want parallel execution via MPI) sudo apt-get install zlib1gcd -dev
To compile with OCaml 4.01.0:
install POY package in PATH navigate to PATH/src make clean
./configure --enable-large-alphabets --enable-long-sequences --enable-unsafe --enable-likelihood --enable-interface=flat
for parallel add --enable-mpi CC=mpicc
ocamlbuild poy.native
binary in ./_build/poy.native