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wgs-data

Here are 10 public repositories matching this topic...

XWangLabTHU / cfDNApipe

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

snv cnv cfdna wgs-data cell-free-dna virus-detection wgbs-data

Updated Aug 18, 2022
Python

Microbiome

Chartiza / Microbiome

scripts for microbiome analysis

microbiome metagenomes wgs-data

Updated Jul 25, 2024
HTML

nriddiford / svParser

Explore and filter structural variant calls from Lumpy and Delly VCF files

vcf variants cancer-genomics somatic-mutations structural-variation wgs-data filter-structural-variants filter-lumpy-express filtering-variants

Updated Nov 30, 2020
Perl

PoisonAlien / basecounts

A tool to extract ATGC/Indel read counts at user specific loci from BAM files

bioinformatics sequencing bam wgs-data nucleotide-frequency basecounts readcounts

Updated Feb 22, 2022
C

CERC-Genomic-Medicine / glimpse_pipeline

Pipeline for variant imputation in low depth sequencing data using GLIMPSE

pipeline genetics sequencing glimpse wgs-data genotype-imputation

Updated Aug 28, 2024
Nextflow

anasrana / spector

R-package to analyse and quantify aberrations in DNA-sequencing data

genomics sequencing r-package whole-genome-sequencing wgs-data dna-sequencing

Updated Jan 19, 2018
R

ellisrichardj / BovTB-nf

Nextflow script for processing WGS data

pipeline nextflow wgs-data fastq-files

Updated Feb 15, 2021
Shell

nriddiford / Investigating-structural-variation-in-cancer-genomes

My lab book for current project: Identifying structural variation in WGS data

cancer-genomics structural-variation wgs-data

Updated Jan 26, 2018
Perl

AscomycotaGapAnalysis

Rowena-h / AscomycotaGapAnalysis

Script and data for Hill, Leitch & Gaya (2021) doi: 10.1016/j.fbr.2021.03.003

fungi wgs-data

Updated Apr 28, 2023
R

Praveen26-09 / parkinsons-oral-gut-brain-axis

Multi-omics characterization of the oral-gut-brain axis in Parkinson's disease using shotgun metagenomics, microbial biomarker discovery, and machine learning.

machine-learning bioinformatics nextflow metagenomics xgboost network-analysis parkinsons-disease microbiome-analysis wgs-data gut-microbiome kraken2 bracken shotgun-metagenomics humann3 oral-microbiome biomarker-prediction microbial-biomarker oral-gut-brainaxis

Updated Jun 30, 2026
HTML

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