EnteroMark: A species-optimized computational pipeline for rapid, accessible Enterococcus faecium genotyping and surveillance .Complete VRE genomic analysis in minutes — not hours
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May 10, 2026 - Python
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virulence
Here are 9 public repositories matching this topic...
Collection of 1069 Escherichia coli virulence factors
science opensource bioinformatics database annotation genomics computational-biology microbial-genomics microbiology ecoli virulence pathogenicity virulence-factor
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Nov 20, 2016
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
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Nov 1, 2021 - Python
Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.
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Apr 11, 2019
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
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Nov 1, 2021 - Python
Bacterial swiss-army-knife pipeline for NGS data
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Apr 16, 2026 - Python
VICMpred: SVM-based method for the prediction of functional proteins of gram-negative bacteria using amino acid patterns and composition
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May 19, 2026
The files in this repository reproduce all the simulations and graphs in the paper, Fofana & Hurford 2022, Parasite-induced shifts in host movement may explain the transient coexistence of high- and low-pathogenic disease strains, J Evol Biol.
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May 19, 2023 - MATLAB
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