transdecoder

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This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts

Snakemake workflow to run transdecoder + trinotate

snakemake sqlite blast transcriptome trinity snakemake-workflows hmmscan transdecoder trinotate

Workflow for de novo transcriptome assemblies from paired-end illumina reads, annotation and quality checks

Using BLAST and Transdecoder.

bash bioinformatics blast trinity protein-domains hmmscan transdecoder swissprot blastp profile-hmm

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