Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)
A Python library for simulating biological and chemical systems using deterministic and stochastic methods, including Euler’s method, Runge-Kutta, SSA, Tau-Leaping, and CLE.
Stochastic Simulator of Chemical Reactions
This repository contains codes developed in 2022 to simulate the biofilm formation with the proposed stochastic model based on quorum sensing and chemical reactions.
GPU-accelerated synthetic single-cell RNA-seq data generator written in pure Julia
Updated code for modelling ASF in a metapopulation within Australia
Dissertation code: benchmarking Gillespie SSA, fixed-step and adaptive τ-leaping on an auto-regulatory gene network (R, 1,000 matched-seed replicates)
A C++ implementation of SK-tau-ROCK methods for stochastic chemical kinetics
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