Spatial Single Cell Analysis in Python
Learning cell communication from spatial graphs of cells
MCP server for spatial transcriptomics analysis through natural language interfaces.
End-to-end spatial transcriptomics pipeline for 10x Genomics Visium human brain glioblastoma — cell type annotation, GBM subtype characterization, and spatial neighborhood analysis
Spatial transcriptomics analysis using 10x Genomics Visium and Xenium platforms
10X Visium spatial transcriptomics analysis with Squidpy
End-to-end CODEX multiplex IF analysis pipeline that includes cell segmentation, phenotyping, and spatial neighborhood analysis on the Schürch/Nolan CRC dataset
Spatial transcriptomics pipeline for 10x Visium breast cancer data with spatial validation
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