Accurate and fast cell marker gene identification with COSG
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Aug 25, 2026 - R
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piaso
Here are 9 public repositories matching this topic...
Accurate and fast cell marker gene identification with COSG
single-cell marker-genes single-cell-rna-seq single-cell-analysis single-cell-atac-seq spatial-transcriptomics single-cell-multiomics piaso
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Sep 4, 2026 - Python
LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics
single-cell spatial-data-analysis single-cell-rna-seq single-cell-analysis spatial-transcriptomics cell-cell-communication ligand-receptor-interaction piaso
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Sep 3, 2026 - Python
PIASO: Precise Integrative Analysis of Single-cell Omics
data-science bioinformatics bioinformatics-pipeline transcriptomics single-cell marker-genes single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq spatial-transcriptomics piaso
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Aug 24, 2026 - Python
Cell-type-resolved gene regulatory network inference from single-cell data.
bioinformatics transcription-factors computational-biology gene-expression scrna-seq single-cell motif-analysis gene-regulatory-network cistrome grn-inference piaso regulon regulon-activity-scoring
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Aug 24, 2026 - Python
Single-file format for single-cell multi-omics and spatial transcriptomics — matrices, metadata, embeddings, fragments and provenance in one SQLite-backed .cytome file, with SQL metadata queries and genomic range indexes.
streaming bioinformatics sqlite computational-biology provenance spatial-data single-cell out-of-core single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq single-cell-omics spatial-transcriptomics single-cell-multiomics piaso
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Sep 4, 2026 - Python
Read, write and stream `.cytome` files natively in R — no Python runtime, no bridge process, no HDF5 intermediate.
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Aug 25, 2026 - R
Agent-neutral knowledge hub that makes the PIASO single-cell omics ecosystem (PIASO, COSG/COSGR, LARIS, Emergene, PIASOmarkerDB) first-class for any coding agent. One canonical source generates Claude skills, Cursor rules, AGENTS.md, llms.txt, and an MCP server.
mcp scrna-seq single-cell agents claude single-cell-genomics single-cell-rna-seq spatial-transcriptomics llms-txt piaso
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Sep 5, 2026 - Python
Genome reference files and tutorial datasets for PIASO
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Aug 22, 2026
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