paga

Here are 5 public repositories matching this topic...

milescsmith / ReductionWrappers

R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)

python wrapper bioinformatics dimensionality-reduction tsne forceatlas2 umap dimension-reduction force-directed-graphs wrappers seurat singlecellexperiment singlecellexperiment-objects paga phate opentsne pacmap dimensional-reduction

Updated Dec 30, 2024
R

h-escoffier / Mouse-cular_Denervation

Star

Transcriptional and epigenetic signature of muscle tissue cells linked to atrophy

rna-seq atac-seq single-cell seurat multiomics paga monocle3 clustree

Updated Jul 17, 2023
Python

MargoSolo / phenotopo

Sponsor

Star

A QC and explainability toolkit for phenotype cohorts: HPO/Phenopacket quality control, annotation-bias checks, outliers, ontology-aware group comparison and robust cohort structure.

visualization bioinformatics quality-control outlier-detection phenotype umap hpo topological-data-analysis phenopackets rare-disease hyperbolic-embeddings paga

Updated Sep 5, 2026
Python

Varun-U-Gowda / adar1-scrna-melanoma

Star

scRNA-seq of ADAR1-KO melanoma TME — pDC/monocyte ISG programs, PAGA pseudotime, TCGA SKCM survival validation | Scanpy · Python

python bioinformatics cancer-genomics survival-analysis scrna-seq single-cell tcga-data melanoma tumor-microenvironment scanpy interferon paga pseudotime-trajectory cancer-immunology adar1

Updated Jun 7, 2026
Python

Thibault7410 / cuLA

Star

Accelerate linear attention with CUDA kernels for GLA, KDA, GDN, and Lightning Attention on NVIDIA Hopper and Blackwell GPUs

python calculator rna-seq calculus algebra gpu minify cuda labview openai atac-seq gpu-computing vectors single-cell calculator-javascript multiomics paga monocle3 culab

Updated Sep 8, 2026
Python

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