A Snakemake-based pipeline for processing and quality-controlling ancient and historical DNA data, including taxonomic assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
bioinformatics snakemake pipeline genomics bioinformatics-pipeline multiqc bam copy-number-variation transposons transposable-elements time-series-analysis adna taxonomic-classification ancientdna taxonomic-profiling taxonomic-binning transposon-detection hdna historical-dna
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Updated
Sep 7, 2026 - Python