Phylogenetic orthology inference for comparative genomics
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Jul 15, 2025 - Python
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gene-duplication
Here are 8 public repositories matching this topic...
An R package to identify and classify duplicated genes from whole-genome protein sequence data
bioinformatics rstats comparative-genomics molecular-evolution gene-duplication whole-genome-duplication
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Sep 11, 2025 - R
An R package for detecting copy number variants from SNPs data
cran r snps genomics genetics copy-number-variation landscape-genetics gene-duplication cnv-analysis
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Jun 4, 2026 - R
Simulator for species and gene trees with asymmetric evolution rates
python simulation evolution phylogenetic-trees phylogenetics gene-families species-trees horizontal-gene-transfer sequence-simulator gene-duplication gene-loss
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Aug 9, 2026 - Python
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
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Oct 8, 2024 - R
Scripts for Lin, Y., Darolti, I., Furman, B. L. F., Almeida, P., Sandkam, B. A., et al., Breden, F., Wright, A. E., Mank, J. E. (2022) Gene duplication to the Y chromosome in Trinidadian Guppies. Molecular Ecology. https://doi.org/10.1111/mec.16355
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Jul 1, 2026 - Jupyter Notebook
Genomic investigation of local adaptation and range expansion in Culex tarsalis, a North American mosquito species known for being the principal vector of the West Nile virus, using reference genome analysis, orthology, gene duplication, dN/dS selection analysis, GO enrichment, and population-level NGS data to compare mosquito populations.
protein-function-prediction mappability genome-alignment west-nile-virus gene-duplication culex-tarsalis genome-masking orthogroup-identification
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Sep 6, 2026 - Jupyter Notebook
Code repository for the analysis of the Genotype-Phenotype Map Properties of the Integer Polyomino Model.
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Dec 8, 2022 - C++
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