Liuy12 / SCdeconR Star 10 Code Issues Pull requests Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference r single-cell differential-expression deconvolution geneset-enrichment-analysis ffpe bulk-rna-seq-deconvolution scdeconr Updated Aug 28, 2026 R
rabiafidan / pure-faf Star 0 Code Issues Pull requests Formalin artefact filtering of tumour sample VCF files cancer-genomics variant-filtration ffpe Updated Dec 10, 2025 HTML
mlevkova / msi-longread-panel-light Star 0 Code Issues Pull requests Targeted long-read transcriptomic profiling pipeline for FFPE tumor samples using Oxford Nanopore sequencing. bioinformatics nanopore transcriptomics msi long-read-sequencing colorectal-cancer ffpe immune-profiling Updated Apr 26, 2026 Shell
bellabluebird / wgs_covaris_ffpe Star 0 Code Issues Pull requests Pipeline designed to evalute FFPE processing kits through qc, variant calling, and truth set comparison analysis. Configured for AWS Batch deployment. wgs nextflow-pipeline ffpe covaris kit-comparison Updated Oct 3, 2025 Nextflow
afvallejo / snPATHOSeq Star 0 Code Issues Pull requests Analysis notebooks supporting snPATHO-Seq for single-nucleus RNA profiling of archival FFPE tissue. transcriptomics single-cell ffpe single-nucleus-rna-seq snpatho-seq Updated Sep 24, 2022 Jupyter Notebook