Hydrodynamic Cytoskeleton Simulator
a Living ENsemble Simulator -- a lens to help you watch biophysics
MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.
This repository contains the source code for the tool GraFT, together with scripts for data processing
Online convertor for cytoskeleton values
Bending Stiffness of Actin Filaments - https://doi.org/10.5281/zenodo.12808969
A computational research repository for The Cosmic Loom Theory (CLT) - a field-based framework proposing that consciousness emerges from coherent system dynamics operating within constrained energetic regimes.
This repository contains the source code for the tool GraFT, together with scripts for data processing
GPU-native, fine-grained mechanistic simulator of single-cell mechanobiology — every filament, motor, adhesion, and cross-link is an explicit particle, not a lumped model. 177k LOC, validation-first, literature-anchored.
Analysis of simulated cell microtubules.
This repository enables the reproducible analysis of an important developmental neuroscience dataset on hypothalamus neuron differentiation. It performs quality control, clustering, trajectory analysis, and identification of marker genes to characterize the differentiation trajectories of glutamatergic and GABAergic Onecut3+ neuronal subtypes.
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