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chromvar
Here are 3 public repositories matching this topic...
ORACLE single-cell ATAC-seq pipeline (Snakemake): 10x fragments to QC/doublets, LSI clustering, MACS3 peaks & differential accessibility, chromVAR/TOBIAS motifs, Cicero co-accessibility & trajectories.
bioinformatics snakemake genomics computational-biology single-cell motif-analysis epigenomics scatac-seq chromatin-accessibility chromvar oracle-platform
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Jul 24, 2026 - Python
snRNA+snATAC multiome of AD DLPFC microglia — chromVAR motif analysis, WNN integration, peak-to-gene linkage, Monocle3 trajectory | Signac · Seurat · R
bioinformatics r atac-seq single-cell alzheimers-disease epigenomics signac seurat microglia snrna-seq multiome monocle3 snatac-seq chromvar peak-to-gene
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Updated
Jun 29, 2026 - R
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