An R 📦 for fast and flexible DNA methylation analysis
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Jul 21, 2026 - R
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bedgraph
Here are 10 public repositories matching this topic...
A Python package for fast operations on 1-dimensional genomic signal tracks
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Apr 3, 2020 - Python
Decode coverage.bedGraph files that use the run-length encoding format.
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Apr 27, 2023 - Jupyter Notebook
FileIO.jl integration for bedGraph files
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May 9, 2024 - Julia
CLI that turns a DNA locus into a per-position Shannon-entropy track (+ gene boundaries) using Evo 2 7B genomic language model. Exported as IGV tracks. Runs on an ephemeral GPU in your own Google Cloud.
bioinformatics genomics gpu google-cloud dna igv genomics-visualization bedgraph shannon-entropy evo2 bedgraph-files genomic-language-model
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Jun 26, 2026 - Python
Generate mappability tracks as BigWig file from genome fasta with GEM
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Oct 24, 2017 - Python
A Shiny app for plotting bedgraphs on short sequences.
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Feb 19, 2024 - R
Read and write support for bedGraph file format.
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May 5, 2024 - Julia
Computes per-sample coverage from multiple BAM, CRAM, or bedGraph files, ensuring each genomic position is counted only once per sample. Chromosomes are processed in parallel to maximize throughput, producing a single tabix-indexed bedGraph.gz file.
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Oct 13, 2025 - Python
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