BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
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Jun 9, 2023 - R
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antismash
Here are 9 public repositories matching this topic...
Reusable bacterial genome mining pipeline for assembled genome FASTA files using QUAST, Bakta, antiSMASH, GECCO, and combined BGC summary reporting.
machine-learning bioinformatics gecco antismash genome-mining natural-products biosynthetic-gene-clusters bacterial-genomics bakta genomics-pipeline
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May 27, 2026 - Shell
A pangenomic pipeline interrogating Campylobacter jejuni bacteriocin biosynthetic capacity, revealing a strict absence of classical systems and the presence of orphan Peptidase_C39 leader-cleavage machinery across an epsilon-proteobacterial cohort.
hmmer antimicrobial-peptides hidden-markov-models antismash pangenomics biosynthetic-gene-clusters bacteriocin campylobacter-jejuni epsilonproteobacteria terpene-biosynthesis betalactone peptidase-c39 abc-transporters
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Apr 25, 2026 - R
QC-locked genome-mining workflow for prioritising putatively novel biosynthetic gene cluster families using BiG-SCAPE/MiBIG outputs and conservative annotation-derived evidence.
antismash genome-mining natural-products actinobacteria biosynthetic-gene-clusters actinos antismash-bgc-annotations actinomycetota bgc-prioritization bigscape mibig microbial-natural-products
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Jun 24, 2026 - Python
A web UI for the fungal version of antiSMASH.
gff3 genbank microbial-genomics microbiology fungi embl antismash secondary-metabolites genome-mining
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Apr 9, 2019 - JavaScript
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
bioinformatics pipeline genomics assembly ngs r-markdown microbiome bash-script antismash bgc snakemake-pipelines nextflow-pipelines
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Sep 6, 2021 - Jupyter Notebook
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