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tolkit

Tree of Life Kit

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  1. telomeric-identifier telomeric-identifier Public

    Identify and find telomeres, or telomeric repeats in a genome.

    Rust 184 16

  2. gfatk gfatk Public

    A plant organellar Graphical Fragment Assembly toolkit

    Rust 17 1

  3. fasta_windows fasta_windows Public

    A Rust implementation of sliding window stats over fastas.

    Rust 15 2

  4. haplotype-windows haplotype-windows Public

    Calculate SNP density in sliding windows over a VCF.

    Rust 9

  5. vcf2msa vcf2msa Public

    Given a VCF and a reference genome, create a multiple sequence alignment of the samples.

    Rust 9

  6. fpma fpma Public

    Fast Plant Mito Annotation.

    Rust 8

Repositories

Showing 10 of 28 repositories
  • telomeric-identifier Public

    Identify and find telomeres, or telomeric repeats in a genome.

    tolkit/telomeric-identifier's past year of commit activity
    Rust 184 MIT 16 8 0 Updated Nov 1, 2026
  • gfatk Public

    A plant organellar Graphical Fragment Assembly toolkit

    tolkit/gfatk's past year of commit activity
    Rust 17 MIT 1 0 0 Updated Oct 15, 2026
  • a-telomeric-repeat-database Public

    A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.

    tolkit/a-telomeric-repeat-database's past year of commit activity
    Python 13 1 1 0 Updated Oct 10, 2026
  • fasta_windows Public

    A Rust implementation of sliding window stats over fastas.

    tolkit/fasta_windows's past year of commit activity
    Rust 15 MIT 2 0 0 Updated Jun 4, 2026
  • fw_regions Public

    Detects low-complexity genomic regions (centromeres, telomeres, satellite arrays) in genome assemblies by applying PELT changepoint detection to the rolling variance of Shannon entropy and CTW signals computed by fasta_windows.

    tolkit/fw_regions's past year of commit activity
    Python 0 0 0 0 Updated Jun 3, 2026
  • tolkein Public

    Tree of Life Kit of Evolutionary Informatics Novelties

    tolkit/tolkein's past year of commit activity
    Python 2 MIT 1 2 1 Updated Feb 9, 2026
  • aa2nucaln Public

    Amino acid to nucleotide alignment, as per this paper: https://academic.oup.com/bioinformatics/article/31/11/1836/2365396

    tolkit/aa2nucaln's past year of commit activity
    Rust 1 MIT 0 0 0 Updated Jul 8, 2025
  • vscan Public
    tolkit/vscan's past year of commit activity
    Rust 0 0 0 0 Updated Oct 30, 2024
  • nemADSQ Public

    A repository containing pipelines for nematode genome assembly, decontamination, scaffolding, and QC

    Nextflow 2 MIT 3 1 0 Updated Sep 14, 2023
  • containerize-conda Public Forked from grst/containerize-conda

    Turn an existing conda environment into a Singularity container

    tolkit/containerize-conda's past year of commit activity
    Python 0 19 0 0 Updated Mar 13, 2023

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