Workflow conditional + macOS

.Dockerfile

@@ -0,0 +1,79 @@
+FROM condaforge/miniforge3:latest AS miniconda
+
+FROM texlive/texlive:latest-full
+
+COPY --from=miniconda /opt/conda /opt/conda
+
+ENV PATH=/opt/conda/bin:$PATH
+
+COPY analysis/environment-branch.yml /tmp/analysis/environment-branch.yml
+COPY pyproject.toml /tmp/pyproject.toml
+COPY package/src /tmp/package/src
+COPY README.md /tmp/README.md
+COPY LICENSE /tmp/LICENSE
+COPY CITATION.cff /tmp/CITATION.cff
+
+# Build the Conda environment in three phases to work around the absence of
+# libquadmath on aarch64: no native libquadmath package exists for arm64, yet
+# gfortran still emits -lquadmath, which breaks capytaine's from-source build
+# (capytaine ships no arm64 wheel).
+#
+# 1. Create the environment with the Conda packages only (strip the pip
+#    section), which installs the compiler toolchain.
+RUN sed '/^[[:space:]]*- pip:/,$d' /tmp/analysis/environment-branch.yml \
+      > /tmp/analysis/environment-nopip.yml \
+ && mamba env create \
+      -n openflash.openflash-on-branch-tex \
+      -f /tmp/analysis/environment-nopip.yml
+
+# 2. If libquadmath is missing (i.e. on aarch64), drop an empty stub into the
+#    env so the linker is satisfied. capytaine references no quadmath symbols,
+#    and Conda links extensions with an rpath to $CONDA_PREFIX/lib, so the stub
+#    resolves at both link and run time.
+RUN mamba run -n openflash.openflash-on-branch-tex bash -c '\
+  if [ ! -e "$CONDA_PREFIX/lib/libquadmath.so" ]; then \
+    echo "void __quadmath_stub(void){}" > /tmp/quadmath_stub.c \
+    && "$CC" -shared -fPIC -Wl,-soname,libquadmath.so.0 \
+         -o "$CONDA_PREFIX/lib/libquadmath.so.0" /tmp/quadmath_stub.c \
+    && ln -sf libquadmath.so.0 "$CONDA_PREFIX/lib/libquadmath.so" \
+    && rm /tmp/quadmath_stub.c; \
+  fi'
+
+# 3. Install the pip packages; capytaine compiles its Fortran extension against
+#    the stub.
+RUN mamba env update \
+      -n openflash.openflash-on-branch-tex \
+      -f /tmp/analysis/environment-branch.yml
+
+ENV PATH=/opt/conda/envs/openflash.openflash-on-branch-tex/bin:$PATH
+
+ENV PYTHONUNBUFFERED=1
+ENV PIP_DISABLE_PIP_VERSION_CHECK=1
+ENV PIP_NO_CACHE_DIR=1
+
+RUN useradd -m openflash
+
+RUN mkdir -p /workspace  \
+ && chown -R openflash:openflash /workspace
+
+RUN mkdir -p /home/openflash/.ipython /home/openflash/.cache /home/openflash/.config \
+ && chown -R openflash:openflash /home/openflash
+
+RUN mkdir -p /tmp/home/.local /tmp/home/.ipython /tmp/home/.cache /tmp/home/.config \
+             /tmp/ipython /tmp/matplotlib /tmp/cache /tmp/jupyter \
+ && chmod -R 777 /tmp/home /tmp/ipython /tmp/matplotlib /tmp/cache  /tmp/jupyter
+
+RUN python -m ipykernel install \
+      --prefix=/opt/conda/envs/openflash.openflash-on-branch-tex
+
+USER openflash
+WORKDIR /workspace
+
+ENV HOME=/tmp/home
+ENV IPYTHONDIR=/tmp/home/.ipython
+ENV XDG_CACHE_HOME=/tmp/home/.cache
+ENV XDG_CONFIG_HOME=/tmp/home/.config
+ENV MPLCONFIGDIR=/tmp/matplotlib
+ENV JUPYTER_DATA_DIR=/tmp/jupyter
+
+CMD ["bash"]

.calkit/env-locks/openflash-on-branch-tex/amd64.json

@@ -0,0 +1,47 @@
+{
+    "RepoTags": [
+        "openflash-on-branch-tex"
+    ],
+    "RepoDigests": [],
+    "Architecture": "amd64",
+    "Os": "linux",
+    "RootFS": {
+        "Type": "layers",
+        "Layers": [
+            "sha256:4d416f5802b27e35b72bc7cf23b9a0135b5810f321b33213976f7b6e603004e2",
+            "sha256:1d70e638e6fc47166ab7f99695374817b8bd1a4f76f6855add9723e5d4600ad8",
+            "sha256:f6abbfcb16d15267190636a64d129388c1017c63e0ba88d6645cc7e2ba96cf71",
+            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
+            "sha256:084a300d9aa225c7c8dddcf1f4b52943962a71f5293bfe315fb45b4979b26d98",
+            "sha256:94341c5a851fa791ecf9496f0d4b80d81d358681972644d599b088683ea29f60",
+            "sha256:64a8268e4aa9457c8301cc85de712ae83298f3cb67bd9e4e69a8b687e854963b",
+            "sha256:da4b7294439259ab23e03a525267ddfb3fda5dcf90094ca1657a402fcefdc76a",
+            "sha256:498fe8fca7f3a287f0e2d91505c4e2576f243fcf18175b0ee0b9a1bc64f8d340",
+            "sha256:0d1f4606c616748fae54b09ff503ad65a71d78f2fcd5b021fe0687620df8ea2f",
+            "sha256:081d458749d39610b2a48b06865f1dc02c33881b2eef43d92340bd1d9f7baf05",
+            "sha256:dd2cbea58177687881831968274f139b28a824be1b62d511d1dafa6bcf07c7bb",
+            "sha256:76b11e3c8b4ed6ba20c6f9c9d2a730fc43dff6dee005a328a2c9d50478bfd2ed",
+            "sha256:09d66d49f79d73649ee359f0e779424bf1ad2ae39e0cf6a2ca549ead8c72ea7b",
+            "sha256:5f0703082b86eda911eeeb51dad3bad9edb031dd036f7c2ff1741a6f9a8d5f48",
+            "sha256:57c7c0264d0699c6e96bff84a05897a7ec2f2858c59f5027c6d1a9dfe99ddb66",
+            "sha256:7000b23019a134e7b1d0bdb2fb2e5bf2117feb6bc3b660d65388c74df7c3a241",
+            "sha256:4c92e5e694696c39f1fbc9404a87c32e8fe8fec5f726bddde89911af56e8844a",
+            "sha256:69df376923a6706959fc106e1baeb3c4b1c3d41df6a090ef79046511490c4dde",
+            "sha256:5397c133875e96b819e46b889469d637e3821052f15f209b1ccb55369b8ac897",
+            "sha256:5ad73e56b66b7cf5f680a53edaf1188f76cfa8cc5f2bb5bc56b77d1d4622250c",
+            "sha256:48a6ff8201487f933d23983f02a3bdf238a1f0fae8fbfab065728b5b8848227e",
+            "sha256:957ef72c745080f61639ca84baaefe26f25d857b9e37a0caa98946f02cd033c3",
+            "sha256:033aa7700526dc25d2e8c8f2b4313a7d5c77f6ed154f0d02d3445ed75f2a9b1b",
+            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef"
+        ]
+    },
+    "DockerfileMD5": "8930fae8c7fef0feb3311446fba042be",
+    "DepsMD5s": {
+        "analysis/environment-branch.yml": "4be82009aeae596a40be0248e15d2f2f",
+        "package/src": "fb1d513041f63ba9e0fd9703f43b59ac",
+        "pyproject.toml": "c036c82893293e1fa9eae68f5731d451",
+        "README.md": "d4ecb4e9de12fcfac2094778ad29fbf5",
+        "LICENSE": "313afdf541ca2b338eaa77f1b698333c",
+        "CITATION.cff": "0ee89a93fb410b3526806206205500af"
+    }
+}

.calkit/env-locks/openflash-on-branch/linux-64.yml

@@ -1,3 +1,4 @@
+name: openflash-openflash-on-branch
 channels:
   - conda-forge
   - defaults
@@ -289,4 +290,3 @@ dependencies:
       - numpy==1.26.4
       - -e ../../..
       - scipy==1.13.1
-name: openflash-openflash-on-branch

.calkit/env-locks/openflash-on-branch/osx-arm64.yml

@@ -0,0 +1,221 @@
+name: openflash-openflash-on-branch
+channels:
+  - conda-forge
+dependencies:
+  - _openmp_mutex=4.5=7_kmp_llvm
+  - _python_abi3_support=1.0=hd8ed1ab_2
+  - altair=6.1.0=pyhd8ed1ab_0
+  - anyio=4.13.0=pyhcf101f3_0
+  - appnope=0.1.4=pyhd8ed1ab_1
+  - asttokens=3.0.1=pyhd8ed1ab_0
+  - attrs=26.1.0=pyhcf101f3_0
+  - aws-c-auth=0.10.1=ha7d4cc1_3
+  - aws-c-cal=0.9.13=h6ee9776_1
+  - aws-c-common=0.12.6=hc919400_0
+  - aws-c-compression=0.3.2=h3e7f9b5_0
+  - aws-c-event-stream=0.7.0=h351c84d_0
+  - aws-c-http=0.10.13=h95cdebe_0
+  - aws-c-io=0.26.3=h4137820_1
+  - aws-c-mqtt=0.15.2=h8860bc9_2
+  - aws-c-s3=0.12.2=h07b101a_1
+  - aws-c-sdkutils=0.2.4=h16f91aa_4
+  - aws-checksums=0.2.10=h3e7f9b5_0
+  - aws-crt-cpp=0.38.3=hba17502_1
+  - aws-sdk-cpp=1.11.747=h30a6df1_4
+  - azure-core-cpp=1.16.2=he5ae378_0
+  - azure-identity-cpp=1.13.3=h810541e_1
+  - azure-storage-blobs-cpp=12.16.0=hc57151b_1
+  - azure-storage-common-cpp=12.12.0=he467506_1
+  - azure-storage-files-datalake-cpp=12.14.0=hf8a9d22_1
+  - backports.zstd=1.4.0=py314h680f03e_0
+  - blinker=1.9.0=pyhff2d567_0
+  - brotli=1.2.0=h7d5ae5b_1
+  - brotli-bin=1.2.0=hc919400_1
+  - brotli-python=1.2.0=py314h3daef5d_1
+  - bzip2=1.0.8=hd037594_9
+  - c-ares=1.34.6=hc919400_0
+  - ca-certificates=2026.4.22=hbd8a1cb_0
+  - cached-property=1.5.2=hd8ed1ab_1
+  - cached_property=1.5.2=pyha770c72_1
+  - cachetools=7.1.1=pyhd8ed1ab_0
+  - certifi=2026.4.22=pyhd8ed1ab_0
+  - charset-normalizer=3.4.7=pyhd8ed1ab_0
+  - click=8.3.3=pyhc90fa1f_0
+  - comm=0.2.3=pyhe01879c_0
+  - contourpy=1.3.3=py314hf8a3a22_4
+  - cpython=3.14.4=py314hd8ed1ab_100
+  - cycler=0.12.1=pyhcf101f3_2
+  - debugpy=1.8.20=py314he609de1_0
+  - decorator=5.2.1=pyhd8ed1ab_0
+  - exceptiongroup=1.3.1=pyhd8ed1ab_0
+  - executing=2.2.1=pyhd8ed1ab_0
+  - fonttools=4.62.1=pyh7db6752_0
+  - freetype=2.14.3=hce30654_0
+  - gflags=2.2.2=hf9b8971_1005
+  - gitdb=4.0.12=pyhd8ed1ab_0
+  - gitpython=3.1.50=pyhd8ed1ab_0
+  - glog=0.7.1=heb240a5_0
+  - h11=0.16.0=pyhcf101f3_1
+  - h2=4.3.0=pyhcf101f3_0
+  - h5netcdf=1.8.1=pyhd8ed1ab_0
+  - h5py=3.16.0=nompi_py314h658a3ac_102
+  - hdf5=2.1.0=nompi_he586413_105
+  - hpack=4.1.0=pyhd8ed1ab_0
+  - httptools=0.7.1=py314h0612a62_1
+  - hyperframe=6.1.0=pyhd8ed1ab_0
+  - idna=3.13=pyhcf101f3_0
+  - importlib-metadata=8.8.0=pyhcf101f3_0
+  - ipykernel=7.2.0=pyh5552912_1
+  - ipython=9.13.0=pyh53cf698_0
+  - ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
+  - itsdangerous=2.2.0=pyhd8ed1ab_1
+  - jedi=0.19.2=pyhd8ed1ab_1
+  - jinja2=3.1.6=pyhcf101f3_1
+  - jsonschema=4.26.0=pyhcf101f3_0
+  - jsonschema-specifications=2025.9.1=pyhcf101f3_0
+  - jupyter_client=8.8.0=pyhcf101f3_0
+  - jupyter_core=5.9.1=pyhc90fa1f_0
+  - kiwisolver=1.5.0=py314hf8a3a22_0
+  - krb5=1.22.2=h385eeb1_0
+  - lcms2=2.19.1=hdfa7624_0
+  - lerc=4.1.0=h1eee2c3_0
+  - libabseil=20260107.1=cxx17_h2062a1b_0
+  - libaec=1.1.5=h8664d51_0
+  - libarrow=24.0.0=h37fbca7_1_cpu
+  - libarrow-acero=24.0.0=hee8fe31_1_cpu
+  - libarrow-compute=24.0.0=h3b6a98a_1_cpu
+  - libarrow-dataset=24.0.0=hee8fe31_1_cpu
+  - libarrow-substrait=24.0.0=h05be00f_1_cpu
+  - libblas=3.11.0=6_h51639a9_openblas
+  - libbrotlicommon=1.2.0=hc919400_1
+  - libbrotlidec=1.2.0=hc919400_1
+  - libbrotlienc=1.2.0=hc919400_1
+  - libcblas=3.11.0=6_hb0561ab_openblas
+  - libcrc32c=1.1.2=hbdafb3b_0
+  - libcurl=8.20.0=hd5a2499_0
+  - libcxx=22.1.5=h55c6f16_1
+  - libdeflate=1.25=hc11a715_0
+  - libedit=3.1.20250104=pl5321hafb1f1b_0
+  - libev=4.33=h93a5062_2
+  - libevent=2.1.12=h2757513_1
+  - libexpat=2.8.0=hf6b4638_0
+  - libffi=3.5.2=hcf2aa1b_0
+  - libfreetype=2.14.3=hce30654_0
+  - libfreetype6=2.14.3=hdfa99f5_0
+  - libgcc=15.2.0=hcbb3090_19
+  - libgfortran=15.2.0=h07b0088_19
+  - libgfortran5=15.2.0=hdae7583_19
+  - libgoogle-cloud=3.3.0=he41eb1d_1
+  - libgoogle-cloud-storage=3.3.0=ha114238_1
+  - libgrpc=1.78.1=h3e3f78d_0
+  - libiconv=1.18=h23cfdf5_2
+  - libjpeg-turbo=3.1.4.1=h84a0fba_0
+  - liblapack=3.11.0=6_hd9741b5_openblas
+  - liblzma=5.8.3=h8088a28_0
+  - libmpdec=4.0.0=h84a0fba_1
+  - libnghttp2=1.68.1=h8f3e76b_0
+  - libopenblas=0.3.32=openmp_he657e61_0
+  - libopentelemetry-cpp=1.26.0=h08d5cc3_0
+  - libopentelemetry-cpp-headers=1.26.0=hce30654_0
+  - libparquet=24.0.0=h16c0493_1_cpu
+  - libpng=1.6.58=h132b30e_0
+  - libprotobuf=6.33.5=h4a5acfd_0
+  - libre2-11=2025.11.05=h4c27e2a_1
+  - libsodium=1.0.21=h1a92334_3
+  - libsqlite=3.53.1=h1b79a29_0
+  - libssh2=1.11.1=h1590b86_0
+  - libthrift=0.22.0=h1fb9c8a_2
+  - libtiff=4.7.1=h4030677_1
+  - libutf8proc=2.11.3=h2431656_0
+  - libwebp-base=1.6.0=h07db88b_0
+  - libxcb=1.17.0=hdb1d25a_0
+  - libxml2=2.15.3=heed7d32_0
+  - libxml2-16=2.15.3=h6967ea9_0
+  - libzlib=1.3.2=h8088a28_2
+  - llvm-openmp=22.1.5=hc7d1edf_1
+  - lz4-c=1.10.0=h286801f_1
+  - markupsafe=3.0.3=py314h6e9b3f0_1
+  - matplotlib=3.10.9=py314he55896b_0
+  - matplotlib-base=3.10.9=py314hc042b31_0
+  - matplotlib-inline=0.2.2=pyhd8ed1ab_0
+  - munkres=1.1.4=pyhd8ed1ab_1
+  - narwhals=2.21.0=pyhcf101f3_0
+  - ncurses=6.6=h1d4f5a5_0
+  - nest-asyncio=1.6.0=pyhd8ed1ab_1
+  - nlohmann_json=3.12.0=h784d473_1
+  - numpy=2.4.3=py314h1569ea8_0
+  - openjpeg=2.5.4=hd9e9057_0
+  - openssl=3.6.2=hd24854e_0
+  - orc=2.3.0=hd11884d_0
+  - packaging=26.2=pyhc364b38_0
+  - parso=0.8.7=pyhcf101f3_0
+  - pexpect=4.9.0=pyhd8ed1ab_1
+  - pillow=12.2.0=py314hab283cf_0
+  - pip=26.1.1=pyh145f28c_0
+  - platformdirs=4.9.6=pyhcf101f3_0
+  - prometheus-cpp=1.3.0=h0967b3e_0
+  - prompt-toolkit=3.0.52=pyha770c72_0
+  - protobuf=6.33.5=py314he407d35_2
+  - psutil=7.2.2=py314ha14b1ff_0
+  - pthread-stubs=0.4=hd74edd7_1002
+  - ptyprocess=0.7.0=pyhd8ed1ab_1
+  - pure_eval=0.2.3=pyhd8ed1ab_1
+  - pyarrow=24.0.0=py314he55896b_0
+  - pyarrow-core=24.0.0=py314h109bba2_0_cpu
+  - pydeck=0.9.2=pyhd8ed1ab_0
+  - pygments=2.20.0=pyhd8ed1ab_0
+  - pyparsing=3.3.2=pyhcf101f3_0
+  - pysocks=1.7.1=pyha55dd90_7
+  - python=3.14.4=h4c637c5_100_cp314
+  - python-dateutil=2.9.0.post0=pyhe01879c_2
+  - python-gil=3.14.4=h4df99d1_100
+  - python-multipart=0.0.28=pyhcf101f3_0
+  - python_abi=3.14=8_cp314
+  - pyyaml=6.0.3=py314h6e9b3f0_1
+  - pyzmq=27.1.0=py312h022ad19_2
+  - qhull=2020.2=h420ef59_5
+  - re2=2025.11.05=ha480c28_1
+  - readline=8.3=h46df422_0
+  - referencing=0.37.0=pyhcf101f3_0
+  - requests=2.33.1=pyhcf101f3_1
+  - rpds-py=0.30.0=py314haad56a0_0
+  - scipy=1.17.1=py314hfc1f868_0
+  - setuptools=82.0.1=pyh332efcf_0
+  - six=1.17.0=pyhe01879c_1
+  - smmap=5.0.3=pyhd8ed1ab_0
+  - snappy=1.2.2=hada39a4_1
+  - stack_data=0.6.3=pyhd8ed1ab_1
+  - starlette=1.0.0=pyhcf101f3_0
+  - streamlit=1.57.0=pyhd8ed1ab_0
+  - tenacity=9.1.4=pyhcf101f3_0
+  - tk=8.6.13=h010d191_3
+  - toml=0.10.2=pyhcf101f3_3
+  - tornado=6.5.5=py314h6c2aa35_0
+  - traitlets=5.15.0=pyhcf101f3_0
+  - typing-extensions=4.15.0=h396c80c_0
+  - typing_extensions=4.15.0=pyhcf101f3_0
+  - unicodedata2=17.0.1=py314h6c2aa35_0
+  - urllib3=2.7.0=pyhd8ed1ab_0
+  - uvicorn=0.46.0=pyhc90fa1f_0
+  - watchdog=6.0.0=py314ha14b1ff_3
+  - wcwidth=0.7.0=pyhd8ed1ab_0
+  - websockets=16.0=py314ha14b1ff_1
+  - wheel=0.47.0=pyhd8ed1ab_0
+  - xarray=2026.4.0=pyhc364b38_0
+  - xorg-libxau=1.0.12=hc919400_1
+  - xorg-libxdmcp=1.1.5=hc919400_1
+  - yaml=0.2.5=h925e9cb_3
+  - zeromq=4.3.5=h4818236_10
+  - zipp=3.23.1=pyhcf101f3_0
+  - zlib=1.3.2=h8088a28_2
+  - zlib-ng=2.3.3=hed4e4f5_1
+  - zstd=1.5.7=hbf9d68e_6
+  - pip:
+      - capytaine==2.3.1
+      - markdown-it-py==4.2.0
+      - mdurl==0.1.2
+      - -e ../../..
+      - pandas==2.3.3
+      - pytz==2026.2
+      - rich==15.0.0
+      - tzdata==2026.2

.calkit/env-locks/openflash-on-main/linux-64.yml

@@ -1,6 +1,7 @@
+name: openflash-openflash-on-main
 channels:
-  - sea-lab
   - conda-forge
+  - sea-lab
   - defaults
 dependencies:
   - _openmp_mutex=4.5=20_gnu
@@ -283,4 +284,3 @@ dependencies:
   - zlib=1.3.2=h25fd6f3_2
   - zlib-ng=2.3.3=hceb46e0_1
   - zstd=1.5.7=hb78ec9c_6
-name: openflash-openflash-on-main