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@shimo-lab

Shimodaira Laboratory

Shimodaira Laboratory, Graduate School of Informatics, Kyoto University

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  1. pvclust pvclust Public

    An R package for hierarchical clustering with p-values

    R 50 6

  2. consel consel Public

    CONSEL: for assessing the confidence of phylogenetic tree selection

    C 6 4

  3. Universal-Geometry-with-ICA Universal-Geometry-with-ICA Public

    Discovering Universal Geometry in Embeddings with ICA (Published in EMNLP 2023)

    Python 20

  4. modelmap modelmap Public

    Embedding language models in probability space via log-likelihood vectors

    Jupyter Notebook 18 3

  5. Drug-Gene-Analogy Drug-Gene-Analogy Public

    Predicting drug–gene relations via analogy tasks with word embeddings (Scientific Reports 15, 17240 (2025))

    Python 1

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