Fix basecall.config path and publish .nextflow.log to LOG_BUCKET - #27

Merged

katherine-stansifer merged 6 commits into

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kstansifer-debug-basecall-automation

May 21, 2026

Commits on May 15, 2026

add correct config file to automation
katherine-stansifer
committed
c83803c
Publish .nextflow.log to LOG_BUCKET after each automation run

katherine-stansifer
and
claude
committed
0d3af8c
Log nextflow log upload failures as errors, not warnings

katherine-stansifer
and
claude
committed
4b2ee78
Guard .nextflow.log upload from masking Nextflow failures; document --log-bucket

katherine-stansifer
and
claude
committed
8c284a4
Simplify .nextflow.log upload guard to a single except Exception

katherine-stansifer
and
claude
committed
834920d

Commits on May 21, 2026

Move finally-block rationale from upload_nextflow_log docstring to its call site
katherine-stansifer
committed
df39c65