Refactor [WIP]: Removed the spatial models from scvi-tools in v1.6 and move them to scVIVA-Tools - #3908
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ori-kron-wis wants to merge 13 commits into
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Refactor [WIP]: Removed the spatial models from scvi-tools in v1.6 and move them to scVIVA-Tools#3908ori-kron-wis wants to merge 13 commits into
ori-kron-wis wants to merge 13 commits into
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…al classes/funcrtion that are no longer used
…al classes/funcrtion that are no longer used
ori-kron-wis
added
on-merge: backport to 1.5.x
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #3908 +/- ##
==========================================
- Coverage 88.58% 88.49% -0.09%
==========================================
Files 241 241
Lines 23744 23731 -13
==========================================
- Hits 21033 21001 -32
- Misses 2711 2730 +19
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ori-kron-wis
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# Conflicts: # pyproject.toml
# Conflicts: # docs/user_guide/models/diagvi.md # src/scvi/external/diagvi/_model.py
# Conflicts: # docs/tutorials/index_multimodal.md # docs/user_guide/index.md # docs/user_guide/models/diagvi.md # docs/user_guide/models/resolvi.md # docs/user_guide/models/stereoscope.md # pyproject.toml # src/scvi/external/diagvi/_model.py # src/scvi/external/gimvi/_model.py # src/scvi/external/gimvi/_utils.py # src/scvi/external/resolvi/_utils.py # src/scvi/external/scviva/_module.py
# Conflicts: # CHANGELOG.md # docs/api/developer.md # docs/user_guide/models/resolvi.md # pyproject.toml # src/scvi/external/gimvi/_module.py # src/scvi/external/resolvi/_model.py # src/scvi/external/scviva/_model.py # src/scvi/external/scviva/_module.py # src/scvi/external/scviva/differential_expression/_de_utils.py # src/scvi/external/scviva/differential_expression/_results_dataclass.py # src/scvi/external/tangram/_model.py # src/scvi/model/_destvi.py # src/scvi/module/_mrdeconv.py # tests/external/resolvi/test_resolvi.py
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inc all peripheral classes/functions that are no longer used