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run_arm.sh: --max-edges option #96

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Merged
adamjohnwright merged 1 commit into from
Oct 9, 2026
Merged

run_arm.sh: --max-edges option #96

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7 changes: 5 additions & 2 deletions scripts/run_arm.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,8 @@
# scripts/run_arm.sh NAME [--server K=V]... [--bench K=V]... [--port N] [--limit N]
#
# --limit N benchmark only the first N pathways (a smoke test, not an arm)
# --max-edges N skip pathways larger than N edges (default 40000; variant-node
# catalogs need more: TP53 exceeds it, specs/046)
# --catalog ID run against builds/ID instead of `current` (a variant build)
#
# --server K=V a DS_* override for the SOLVER (set in the API container)
Expand Down Expand Up @@ -41,13 +43,14 @@ die() { echo "run_arm: $*" >&2; exit 1; }
[ $# -ge 1 ] || die "usage: scripts/run_arm.sh NAME [--server K=V]... [--bench K=V]... [--port N]"
NAME=$1; shift
[[ "$NAME" =~ ^[A-Za-z0-9._-]+$ ]] || die "NAME must be [A-Za-z0-9._-]+"
SERVER=(); BENCH=(); PORT=8090; LIMIT=(); CATALOG_ID=""
SERVER=(); BENCH=(); PORT=8090; LIMIT=(); CATALOG_ID=""; MAX_EDGES=40000
while [ $# -gt 0 ]; do
case "$1" in
--server) [[ "${2:-}" == DS_*=* ]] || die "--server needs DS_NAME=value"; SERVER+=("$2"); shift 2 ;;
--bench) [[ "${2:-}" == *=* ]] || die "--bench needs NAME=value"; BENCH+=("$2"); shift 2 ;;
--port) PORT=$2; shift 2 ;;
--limit) LIMIT=(--limit "$2"); shift 2 ;;
--max-edges) [[ "${2:-}" =~ ^[0-9]+$ ]] || die "--max-edges needs a number"; MAX_EDGES=$2; shift 2 ;;
--catalog) [ -n "${2:-}" ] || die "--catalog needs a build id"; CATALOG_ID=$2; shift 2 ;;
*) die "unknown argument $1" ;;
esac
Expand Down Expand Up @@ -136,7 +139,7 @@ mkdir -p "$OUT"
STARTED=$(date -Is); status=0
for gt in curator experimental; do
env "${BENCH[@]}" DELTASIGNAL_BASE="http://localhost:$PORT" DS_CATALOG_ROOT="$BUILD" \
"$PY" "$WT/bench/benchmark_vs_mpbiopath.py" --max-edges 40000 "${LIMIT[@]}" --ground-truth "$gt" \
"$PY" "$WT/bench/benchmark_vs_mpbiopath.py" --max-edges "$MAX_EDGES" "${LIMIT[@]}" --ground-truth "$gt" \
--report "$OUT/${gt}_report.tsv" --dump-cases "$OUT/${gt}_cases.tsv" > "$OUT/$gt.log" 2>&1 \
|| { echo "run_arm: $gt benchmark failed; see $OUT/$gt.log" >&2; status=1; break; }
done
Expand Down
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