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quentinblampeyquentinblampey
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cleanup visium tuto
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‎docs/10x_tutorials/visium/Selection_1_cells_stats.csv‎

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#Selection name: Selection 1
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#Area (µm^2): 2261.18
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Cell ID,Cluster,Transcripts,Area (µm^2)
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aaaaanaj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
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aaaaabpb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
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aaaabcci-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,27,4.38
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aaaaannn-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,10,4.38
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aaaabeia-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaaadak-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
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aaaabdnc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,8,4.38
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aaaaalmm-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,5,4.38
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aaaabekh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
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aaaaandb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
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aaaaadgo-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,29,4.38
15+
aaaabbje-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,17,4.38
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aaaabacc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,9,4.38
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aaaabcpo-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
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aaaaaldi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,18,4.38
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aaaaakho-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,7,4.38
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aaaaadbm-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaaafko-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
22+
aaaabihl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,18,4.38
23+
aaaaagdp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,24,4.38
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aaaabcph-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
25+
aaaabgnf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,12,4.38
26+
aaaabiem-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,6,4.38
27+
aaaabgnl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,9,4.38
28+
aaaaaoek-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,23,4.38
29+
aaaaafgl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,9,4.38
30+
aaaaadhe-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
31+
aaaaaoje-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
32+
aaaaaeao-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,29,4.38
33+
aaaaachp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,62,4.38
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aaaaalhj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
35+
aaaaaphc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,10,4.38
36+
aaaabboi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,41,4.38
37+
aaaaafcf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
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aaaaabon-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,12,4.38
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aaaabhap-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,24,4.38
40+
aaaaakhh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
41+
aaaabjhb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,36,4.38
42+
aaaaaeja-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,16,4.38
43+
aaaaaika-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,10,4.38
44+
aaaabego-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,21,4.38
45+
aaaaaekj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,6,4.38
46+
aaaaafdg-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaaadac-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,12,4.38
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aaaaabii-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,27,4.38
49+
aaaaancl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaaakam-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
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aaaaaimb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,10,4.38
52+
aaaabhlc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,6,4.38
53+
aaaaafnj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,3,4.38
54+
aaaaancb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,1,4.38
55+
aaaaaabi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,5,4.38
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aaaabend-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
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aaaaadlk-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,23,4.38
58+
aaaabani-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,5,4.38
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aaaabiod-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,35,4.38
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aaaaameh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaaacpo-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
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aaaaanib-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,26,4.38
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aaaabfch-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,16,4.38
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aaaaagjb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,29,4.38
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aaaabiea-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
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aaaaacka-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,33,4.38
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aaaabbfn-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,30,4.38
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aaaaafca-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
69+
aaaaagej-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,12,4.38
70+
aaaabejh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,45,4.38
71+
aaaabifl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,30,4.38
72+
aaaaacdd-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
73+
aaaabgbb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,25,4.38
74+
aaaaampj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
75+
aaaabjfl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,5,4.38
76+
aaaaabeg-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,8,4.38
77+
aaaabiic-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
78+
aaaabanj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,34,4.38
79+
aaaabaam-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,24,4.38
80+
aaaabihk-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,18,4.38
81+
aaaaacfp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,42,4.38
82+
aaaaaanp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
83+
aaaabcdh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
84+
aaaabfgj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,12,4.38
85+
aaaabagc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,32,4.38
86+
aaaabech-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
87+
aaaabbai-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,49,4.38
88+
aaaaajef-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,63,4.38
89+
aaaaammc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,23,4.38
90+
aaaabcha-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,46,4.38
91+
aaaaafhj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,45,4.38
92+
aaaaajnp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
93+
aaaaanhf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,11,4.38
94+
aaaaaigc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,10,4.38
95+
aaaaapeb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
96+
aaaaachl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,49,4.38
97+
aaaabgln-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,22,4.38
98+
aaaaappi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,18,4.38
99+
aaaaaoia-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,64,4.38
100+
aaaaamnf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,24,4.38
101+
aaaaacag-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,43,4.38
102+
aaaabcfm-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,5,4.38
103+
aaaabijf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
104+
aaaaalpo-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
105+
aaaabecb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
106+
aaaabigi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,16,4.38
107+
aaaaaofh-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,9,4.38
108+
aaaabfpk-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,4,4.38
109+
aaaabakd-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
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aaaaagmo-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
111+
aaaaaenn-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
112+
aaaaaaha-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,27,4.38
113+
aaaaaolp-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,62,4.38
114+
aaaabhlg-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,17,4.38
115+
aaaabhil-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,9,4.38
116+
aaaaagpf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,27,4.38
117+
aaaabhda-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,25,4.38
118+
aaaabigf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,16,4.38
119+
aaaaalbm-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,50,4.38
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aaaabblc-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,19,4.38
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aaaabbgf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,61,4.38
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aaaaaibj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,14,4.38
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aaaabfmd-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,50,4.38
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aaaaabml-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,13,4.38
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aaaaabeb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,46,4.38
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aaaaabgi-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,27,4.38
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aaaaapmf-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
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aaaaaako-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,7,4.38
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aaaabfeb-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,21,4.38
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aaaaangn-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,21,4.38
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aaaaaghl-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,18,4.38
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aaaabcgj-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,15,4.38
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aaaaallk-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,6,4.38
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aaaaamif-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,2,4.38
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aaaaadpg-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,8,4.38
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aaaaanga-1,CytAssist_FFPE_Human_Colon_Post_Xenium_Rep1,1,4.38

‎docs/10x_tutorials/visium/assets/lasso.png‎

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‎docs/10x_tutorials/visium/assets/selection.png‎

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‎docs/10x_tutorials/visium/visium_tuto.ipynb‎

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