Update the Quant AQ CLI - #35

Merged

emmleroy merged 135 commits into

emmleroy-v1.0.0

Jul 15, 2026

Commits on Jun 24, 2026

Update python to 3.9+ and Poetry to 1.0+
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7ec075a
Remove deprecated is_datetime_or_timedelta_dtype from pandas
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1895093
Bump actions/cache to v4 and release-drafter to v6
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cdd235d
Bump github runner image to ubuntu-latest
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68e06db
Add Python 3.11 to gh-actions version matrix
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67f04d1
Bump version from 0.5.0 to 1.0.0rc0
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4070047
Remove redundant timestamp re-conversion
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2954ed8
Merge pull request #28 from quant-aq/emmleroy-sc-20241-update-poetry-and-python-versions
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df5cefc

Commits on Jun 25, 2026

Commits on Jun 26, 2026

Commits on Jun 29, 2026

Commits on Jun 30, 2026

Merge pull request #31 from quant-aq/emmleroy-sc-20239-modify-resample
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9235f1a
Use namedtuple for FLAG and FLAG_CRITERIA
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6c74da7
Replace single-filter flag command with multi-filter flagging
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02606fb
Add util for determining the timestamp col
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28197e1
Refactor - rename bit to flag_value, fix click commands
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1f8f9ba
Update tests
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79e26bf
Fix indentation
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003d5ad
Remove relative imports
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d4b2c97
Remove arisense flagging functionality
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22b7560
Modify safe_loader() to add device serial number to rawSD columns
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61f6d34
Add func to infer data model from the sn column
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f0b40aa
Add func to infer data source from the dataframe sampling frequency (tdiff)
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5ad1d1f
Infer data model and source in flag_dataframe() instead of taking args
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045e34b
Define identical FLAG_DEFINITIONS for QuantAQ products and modifiable FLAG_CRITERIA
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d04686a
Convert model-specific FLAG_DEFINITIONS into one generic list
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e19c028
Remove tests for rawSD flagging - currently not implemented
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fe018eb
Upgrade deps to Click8.x
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30646f7
Port expunge_dataframe() and echo_flag_table() from Isoprene
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89a2ce6
Move flag_summary and echo_flag_table to flag.py and fix all_nan_columns definition
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49c186a
Remove arisense from test_expunge() and add some expunge tests from Isoprene
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cae63d5
Remove feather tests and fix --wind unpack error in resample CLI
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2e67857

Commits on Jul 1, 2026

Remove data model and data source as required args to flag_command
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eb2c043
Remove data model and data source as required args in cli logic and tests
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04d34ed
Fix cli args again
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9e729a7
Add jupyter for playbook notebooks
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cf1fe9a
Rename quantaq_cli to quantaq_py
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61ccdea
Add logging configuration file
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7d09cc4
Create importable concat_files() function and move concat_command() to cli.py
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b11c7c5
Create importable merge_files() function and move merge_command() to cli.py
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554d0fe
Create importable resample_dataframe() function and move resample_command() to cli.py
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6afab69
Add importable flag_dataframe() and echo_flag_table(), move flag_command to cli.py
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736358d
Create importable expunge_dataframe(), move expunge_command to cli.py
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6db884c
Create importable clean_file(), move clean_command to cli.py
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ace9101
Remove feather functionality for parquet
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134f7b0
Make add_sn_column an optional arg
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63fee0d
Remove console/commands sub-dirs
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ee78d7f
Add tests for parquet file support
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4f332ba
Move library function into quantaq_py/toolkit
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bfe66fb

Commits on Jul 2, 2026

Commits on Jul 6, 2026

Commits on Jul 8, 2026

Commits on Jul 13, 2026

Commits on Jul 14, 2026

Add column names and dtypes to validate_schema() and call this before expunging or flagging
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8f1fbf6
Merge pull request #33 from quant-aq/sdcard-reflagging-sc-20242
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e9aeffb
Attempt to update docs
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609c38a
Another attempt at making docs
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8b9a47c
Actually succeed at updating docs
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20072db
Undo package re-name
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e443b00
Update list of supported Python versions
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36eaf77
gitignore vscode settings
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49189e5
Add overview of library funcs
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8581201
fix: add optional args to merge command
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b3e23f8
Update usage docs
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14cfe15
Remove unused loguru levels
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2a9fe0b
Change default suffixes for keep=left/left to empty string (columns retain their original names)
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d14bc68
Format usage.rst
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af3461e
Delete test log files
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f6b323f
Update log usage without renamed package
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92504b5
Add logging configs and imports
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4b20e02
Allow imports from toolkit module
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f142999
Don't coerce dtypes when expunging and move flag nan check to flag_dataframe
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156b4f9
Don't coerce dtypes when expunging and move flag nan check to flag_dataframe
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aa77d34
For duplicated columns after merging, collapse if the duplicated columns are identical
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28deb3b
Modify merge tests to account for collapsed duplicated, identical columns and don't safe_load merge output
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b8b9825
Create example notebook for using the Python library
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5c0d811
Fix docstring indentation issue
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f1002fc
Fix docstring indentation issue
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c549454
Don't cross-reference options
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05027dc
Re-run notebook
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e4b29e1
Move merge columns assertion to a helper func; and undo no safe_loading of df3
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3ecaf2a
Add tests for keep left/right
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e8666b0
Don't use default merge test assertion if keep=left/right
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83d7cdb
Remove extra cells
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8cb2013
Fix indentation issues again
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bbf3120
Re-introduce default schema validation for expunge and flag
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1bbdad5
Add test for nan flags
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4f9531b
Modify public vs private functions
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4f74cc7
Remove extra cells again
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8cbf4e7
fix: fix cli suffixes specification and add tests for custom suffixes
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cf5d278
Re-order imports
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c46a7a2

Commits on Jul 15, 2026