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q2cli may select an unwritable shared cache directory in centrally-installed Conda environments

Status: Open.

#402 In qiime2/q2cli;

· zhuofeih opened on Jun 25, 2026

top-level rachis command

Status: Open.

#395 In qiime2/q2cli;

· gregcaporaso opened on Apr 23, 2026

q2-feature-tables usage examples render many quotes

Status: Open.

#372 In qiime2/q2cli;

· cherman2 opened on Aug 7, 2025

improve error message from qiime tools replay-proveance on invalid input file path

Status: Open.

#321 In qiime2/q2cli;

· gregcaporaso opened on Oct 10, 2023

Alternative boolean representation

Status: Open.

#257 In qiime2/q2cli;

· thermokarst opened on Apr 13, 2021

report some additional information on export of artifacts

Status: Open.

#249 In qiime2/q2cli;

· gregcaporaso opened on Aug 18, 2020

Expose --examples flag at the plugin level

Status: Open.

#245 In qiime2/q2cli;

· thermokarst opened on Jun 24, 2020

--p-exclude-ids description is not clear, request clarification in manual

Status: Open.

#248 In qiime2/q2cli;

· mestaki opened on Feb 6, 2020

Running multiple qiimes concurrently before refreshing the cache causes fireworks

Status: Open.

#186 In qiime2/q2cli;

· BenKaehler opened on Apr 26, 2018

Casing in parameters is mangled resulting in KeyError

type:bugSomething is wrong.Something is wrong.

Status: Open.

#181 In qiime2/q2cli;

· ebolyen opened on Mar 16, 2018

qiime tools import: show which formats are supported by a type

enhancement

Status: Open.

#172 In qiime2/q2cli;

· jairideout opened on Dec 28, 2017

tab completion breaks on multi-word parameters

type:bugSomething is wrong.Something is wrong.

Status: Open.

#89 In qiime2/q2cli;

· gregcaporaso opened on Oct 21, 2016