Skip to content

Release#247

Merged
EddieLF merged 1014 commits into
mainfrom
staging
Jun 2, 2025
Merged

Release#247
EddieLF merged 1014 commits into
mainfrom
staging

Conversation

@EddieLF

@EddieLF EddieLF commented Sep 30, 2024

Copy link
Copy Markdown

Release contains upstream commits from May to October 2024.

From the upstream changelog:

9/19/24

  • Update Biosample choices (REQUIRES DB MIGRATION)
  • Add support for Azure OAuth

8/14/24

  • Remove ONT support (REQUIRES DB MIGRATION)
  • Add "Validated Name" functional tag (REQUIRES DB MIGRATION)

8/9/24

  • Update directory structure for search backend

8/2/24

  • Adds index_file_path to IGV Sample model (REQUIRES DB MIGRATION)

7/24/24

  • Split RNA Sample models (REQUIRES DB MIGRATION)

7/8/24

  • Add VLM contact for Projects (REQUIRES DB MIGRATION)

6/11/24

  • Add "Partial Phenotype Contribution" functional tag (REQUIRES DB MIGRATION)

5/24/24

  • Adds external_data to Family model (REQUIRES DB MIGRATION)
  • Adds post_discovery_mondo_id to Family model (REQUIRES DB MIGRATION)
  • Adds guid and created fields to PhenotypePrioritization model (REQUIRES DB MIGRATION)
  • Enable "Reports" tab by default for local installations

5/8/24

  • Adds dynamic analysis groups (REQUIRES DB MIGRATION)

hanars and others added 30 commits August 8, 2024 15:32
…/pip/django-4.2.15

Bump django from 4.2.14 to 4.2.15
…e-family-project-tables

search uses family and project tables in sample_type directory
Bumps [aiohttp](https://github.com/aio-libs/aiohttp) from 3.9.4 to 3.10.2.
- [Release notes](https://github.com/aio-libs/aiohttp/releases)
- [Changelog](https://github.com/aio-libs/aiohttp/blob/master/CHANGES.rst)
- [Commits](aio-libs/aiohttp@v3.9.4...v3.10.2)

---
updated-dependencies:
- dependency-name: aiohttp
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
…eam-merge-conflict

Fix to old upstream merge conflict
@EddieLF EddieLF mentioned this pull request May 15, 2025

@MattWellie MattWellie left a comment

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I'm approving because 1000 is a really nice number of commits to include in a single update. 10/10

On second thoughts... this is a lot of changes and probably shouldn't be deployed on a whim...

Merge conflict fix (reattempt - no squashing!)
Fully comment out test_query_variants hail search unit test
@EddieLF EddieLF requested a review from cassimons May 26, 2025 23:54
@EddieLF EddieLF mentioned this pull request Jun 2, 2025
@EddieLF EddieLF merged commit d7538a9 into main Jun 2, 2025
14 of 15 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

10 participants