Issues

• --regions crashes when multiple ligand regions share the same first residue

  pharmai/plip#206 · Filter by author LukasBuschmann opened on Jul 22, 2026

• Failed job submission

  pharmai/plip#205 · Filter by author liekoppp opened on Jul 6, 2026
  1

• fetch specific ligand

  pharmai/plip#202 · Filter by author Yogesh1-11 opened on Apr 3, 2026

• Some Hbonds not detected while ChimeraX detects them

  pharmai/plip#201 · Filter by author CLG68 opened on Jan 20, 2026
  1

• python setup.py install alias plip='python plip/plip/plipcmd.py'

  pharmai/plip#199 · Filter by author Chengbo123 opened on Dec 19, 2025

• Support for additional lanthanide ions: can users add custom Ln³⁺ definitions?

  pharmai/plip#198 · Filter by author jjjjjqt opened on Dec 15, 2025
  1

• Incorrect Saltbridge identification on Disaccharides

  pharmai/plip#197 · Filter by author ct-jcabot opened on Dec 11, 2025
  3

• as_string=True argument does not work in plip.structure.preparation.PDBComplex.load_pdb()

  pharmai/plip#186 · Filter by author AAriam opened on Jun 15, 2025

• Ligand coordinates LIGCOO and receptor coordinates PROTCO mistakenly swapped in BindingSiteReport.halogen_info

  pharmai/plip#185 · Filter by author AAriam opened on Jun 15, 2025

• [BUG] fixes pdb file cause FileNotFoundError when using --nofixfile and --pymol

  pharmai/plip#184 · Filter by author chAwater opened on Jun 6, 2025

• When outputting the result files, only two PBD files were produced, without the result files report.txt, report.xml, and pymol.pse.

  pharmai/plip#183 · Filter by author 25liuzuyan opened on May 28, 2025
  1

• Pymol.cmd.read_pdbstr is missing "oname" attribue

  pharmai/plip#180 · Filter by author CtrlShanya opened on May 21, 2025

• Misidentification of Ligand Atoms vs Protonation

  pharmai/plip#179 · Filter by author CLG68 opened on May 11, 2025
  1

• tmpfile created in PDBComplex is not deleted upon program exit

  pharmai/plip#175 · Filter by author BHM-Bob opened on Mar 22, 2025

• Big Issue: plip can't batch generate pse-files for multiple complex.pdb files.

  pharmai/plip#174 · Filter by author FeizhenWu opened on Mar 19, 2025

• not finding H bond between HIS 95 NE2 and 6IC 202 N01 in 7rpz

  pharmai/plip#171 · Filter by author hstern2 opened on Feb 6, 2025
  1

• Bug in result

  pharmai/plip#167 · Filter by author TH1052638958 opened on Dec 26, 2024
  3

• [Bug] In halogen bonds ligand coordinate is assigned to "protcoo"

  pharmai/plip#166 · Filter by author andrew0901 opened on Dec 18, 2024

• OverflowError: Python integer -1000 out of bounds for uint32 int32_to_negative(int32) in supplemental.py

  pharmai/plip#157 · Filter by author gmrandazzo opened on Aug 16, 2024

• Request for Official PLIP User Manual and Python Usage Documentation

  pharmai/plip#156 · Filter by author Mengo-ye opened on Jul 19, 2024
  1

• Question about function plip.structure.detection.halogen

  pharmai/plip#155 · Filter by author ivandon15 opened on May 16, 2024

• How to get Information on sidechain/backbone hydrogen bond type in command options?

  pharmai/plip#154 · Filter by author JeongSooNa opened on Mar 31, 2024

• Incorrectly indexed interacting residues

  pharmai/plip#148 · Filter by author kaw97 opened on Dec 12, 2023
  2

• Extract interaction specifically for RNA-small molecule ligand and exclude other interactions in the output

  pharmai/plip#147 · Filter by author JiayiLi21 opened on Oct 14, 2023

• MmCIF support

  pharmai/plip#146 · Filter by author xrobin opened on Sep 29, 2023
  2