Search results

Update saddle_strength() to properly compute 0 extent

Status: Open.

#565 In open2c/cooltools;

· ieres-amgen opened on Mar 23, 2026

rearrange fails if 'name' column is not present in provided view table

Status: Open.

#563 In open2c/cooltools;

· dmalzl opened on Nov 17, 2025

cooltools.expected_cis is not applicable to circular chromosomes

Status: Open.

#562 In open2c/cooltools;

· oganesson76 opened on Sep 15, 2025

Problem with Saddle-analyses

Status: Open.

#561 In open2c/cooltools;

· phil622 opened on Sep 9, 2025

Pandas future warning

Status: Open.

#560 In open2c/cooltools;

· thomas-reimonn opened on Sep 8, 2025

Cooltools pileup slow with mixed chromosomes

Status: Open.

#555 In open2c/cooltools;

· bskubi opened on Jun 30, 2025

cooltools 0.7.1 'from matplotlib.cm import register_cmap' & 'from matplotlib.colormaps import register' import errors (solved by downgrading matplotlib)

Status: Open.

#549 In open2c/cooltools;

· guoyun-chen opened on Mar 19, 2025

Neither from matplotlib.cm import register_cmap nor from matplotlib.colormaps import register works in cooltools 0.7.1 for supporting matplotlib 3.9

Status: Open.

#544 In open2c/cooltools;

· ljw20180420 opened on Dec 11, 2024

first diagonal NaNs for smoothed expected_cis

Status: Open.

#509 In open2c/cooltools;

· gfudenberg opened on Mar 11, 2024

allow alternate reductions for aggregation across diagonals

enhancement

Status: Open.

#507 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024

synchronize CLI and API defaults for get_expected_cis smoothing & aggregation

enhancement

Status: Open.

#506 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024

migrate log-smoothing to mini-library

enhancement

Status: Open.

#505 In open2c/cooltools;

· gfudenberg opened on Mar 4, 2024