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Optimizations for multi-threading

Status: Open.

#111 In onecodex/needletail;

· RagnarGrootKoerkamp opened on Dec 10, 2025

Consider dropping Send requirement on generic Read param to FastxReader

Status: Open.

#95 In onecodex/needletail;

· jchorl opened on Jan 23, 2025

Profile-Guided Optimization (PGO) benchmark results

Status: Open.

#72 In onecodex/needletail;

· zamazan4ik opened on Feb 9, 2024

I am looking for a function that gives me an iterator over the read SequenceRecord's.

Status: Open.

#70 In onecodex/needletail;

· stela2502 opened on Oct 4, 2023

string compress

Status: Open.

#59 In onecodex/needletail;

· jianshu93 opened on Aug 29, 2022

bit_kmers function will panic at 'attempt to multiply with overflow', if k-mer length is longer than 32 bp.

enhancement

Status: Open.

#58 In onecodex/needletail;

· yiolino opened on Mar 29, 2022

Add a new iterator to skip "bad" bases without canonicalization

Status: Open.

#40 In onecodex/needletail;

· apcamargo opened on Feb 8, 2020

Benchmark against C implementations

Status: Open.

#34 In onecodex/needletail;

· bovee opened on Sep 10, 2019

Support NA -> AA translation

Status: Open.

#33 In onecodex/needletail;

· bovee opened on Sep 10, 2019

Add streaming hash structures

Status: Open.

#30 In onecodex/needletail;

· bovee opened on Aug 27, 2019

Do proptest testing

Status: Open.

#27 In onecodex/needletail;

· bovee opened on Aug 22, 2019

Better API

Status: Open.

#18 In onecodex/needletail;

· bovee opened on Aug 24, 2018