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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 207 69

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    70 58

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 50 16

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 38 15

  5. Physics-of-Behavior-Tutorials Physics-of-Behavior-Tutorials Public

    Jupyter Notebook 37 5

  6. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 21 8

Repositories

Showing 10 of 205 repositories
  • AntsArray Public
    oist/AntsArray's past year of commit activity
    Python 1 0 0 0 Updated Sep 30, 2026
  • nf-core_configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    oist/nf-core_configs's past year of commit activity
    Nextflow 0 MIT 375 0 1 Updated Sep 29, 2026
  • neuro-workflow Public
    oist/neuro-workflow's past year of commit activity
    Jupyter Notebook 18 7 8 2 Updated Sep 29, 2026
  • MLcourse Public
    oist/MLcourse's past year of commit activity
    JavaScript 0 0 0 0 Updated Sep 28, 2026
  • SiamJEPA Public
    oist/SiamJEPA's past year of commit activity
    Python 5 0 0 0 Updated Sep 27, 2026
  • VisualStimulation Public

    matlab gui for vstim with psychophysics toolbox

    oist/VisualStimulation's past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Sep 24, 2026
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork's past year of commit activity
    Nextflow 0 MIT 8 0 0 Updated Sep 24, 2026
  • ScrambledTreeBuilder Public

    Builds Phylogenetic Trees Showcasing Genome Scrambling

    oist/ScrambledTreeBuilder's past year of commit activity
    R 1 1 2 2 Updated Sep 24, 2026
  • imrl Public

    Official implementation of my PhD thesis entitled "Unified Information-Theoretic Framework for Intrinsic Rewards in Reinforcement Learning".

    oist/imrl's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 18, 2026
  • gecs Public Forked from igorsdub/gecs

    Good Enough Coding in Science teaches software development practices for scientific projects

    oist/gecs's past year of commit activity
    HTML 0 MIT 2 0 0 Updated Sep 18, 2026
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