In arch linux, I try to install gputools_1.0.tar.gz with R CMD INSTALL --configure-args="--with-nvcc=/opt/cuda/bin/nvcc --with-r-include=/usr/include/R" gputools_1.0.tar.gz but I get the post's title error.
Full Output:
$ R CMD INSTALL --configure-args="--with-nvcc=/opt/cuda/bin/nvcc --with-r-include=/usr/include/R" gputools_1.0.tar.gz
* installing to library ‘/home/censored/R/x86_64-pc-linux-gnu-library/3.2’
* installing *source* package ‘gputools’ ...
** package ‘gputools’ successfully unpacked and MD5 sums checked
checking "CUDA compiler"... "using NVCC=/opt/cuda/bin/nvcc"
checking "root of the CUDA install directory"... "environment variable CUDA_HOME not set"
"using CUDA_HOME=/opt/cuda"
checking "location of CUDA libraries"... checking for "/opt/cuda/lib/libcublas.so"... no
checking for "/opt/cuda/lib64/libcublas.so"... yes
checking "R"... "using /usr/lib64/R for the root of the R install directory"
"using /usr/include/R for R header files"
checking for rpath flag style... checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
rpath flag style... gnu
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: creating ./config.status
config.status: creating src/Makefile
** libs
** arch -
/opt/cuda/bin/nvcc -c -Xcompiler "-fpic -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong" -I. -I"/opt/cuda/include" -I"/usr/include/R" rinterface.cu -o rinterface.o
/usr/include/string.h: In function ‘void* __mempcpy_inline(void*, const void*, size_t)’:
/usr/include/string.h:652:42: error: ‘memcpy’ was not declared in this scope
return (char *) memcpy (__dest, __src, __n) + __n;
^
Makefile:32: recipe for target 'rinterface.o' failed
make: *** [rinterface.o] Error 1
ERROR: compilation failed for package ‘gputools’
* removing ‘/home/censored/R/x86_64-pc-linux-gnu-library/3.2/gputools’
Is there a hope? :)
In arch linux, I try to install
gputools_1.0.tar.gzwithR CMD INSTALL --configure-args="--with-nvcc=/opt/cuda/bin/nvcc --with-r-include=/usr/include/R" gputools_1.0.tar.gzbut I get the post's title error.Full Output:
Is there a hope? :)