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Pull requests: nf-core/modules

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Pull requests list

Add fgumi/extract
#11546 opened May 6, 2026 by atrigila Contributor • Draft
Disable implicit parallelism in variancepartition/dream
#11545 opened May 6, 2026 by delfiterradas Contributor • Draft
17 tasks
1
@delfiterradas
Revert "Fix dumpParametersToJson to be compatible with parameter typing" (#11532)
#11544 opened May 6, 2026 by pinin4fjords Member • Draft
1
Bump nextflow to 26.04.0
#11543 opened May 6, 2026 by nvnieuwk Contributor Loading…
17 tasks
2
fix(trimgalore): stack process_low_memory on top of process_low
#11541 opened May 6, 2026 by pinin4fjords Member Loading…
2
New Module: Octopusv/correct
#11540 opened May 6, 2026 by manascripts Member Loading…
12 of 13 tasks
1
Update to topics gappa/*
#11538 opened May 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
3
@LouisLeNezet
Remove fai index from bowtie2 modules
#11537 opened May 5, 2026 by Kevin-Brockers Contributor Loading…
5 of 6 tasks
nanofilt topic channel migration
#11534 opened May 5, 2026 by FernandoDuarteF Contributor Loading…
17 tasks
1
Bump VSEARCH version to 2.31.0
#11530 opened May 5, 2026 by pieterprovoost Loading…
4 of 17 tasks
7
fix: pass the expected input to bwamem1_index and bwamem2_index
#11520 opened May 4, 2026 by piplus2 Loading…
10 of 16 tasks
1
9
New module: sdrfpipelines/convertmhcquant
#11514 opened May 4, 2026 by jonasscheid Contributor Loading…
12 of 14 tasks
10
Add module to fetch SDRF files from PRIDE Archive
#11513 opened May 4, 2026 by jonasscheid Contributor Loading…
14 tasks done
8
feat(spikeinterface/sort): add module wrapping SpikeInterface 0.101.2 spike sorting
#11464 opened May 3, 2026 by olaflaitinen Member • Draft
8 of 12 tasks
Update gamma/gamma to using the versions topic channel size/s
#11462 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
1
nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards size/l
#11458 opened May 1, 2026 by vagkaratzas Contributor Loading…
9 of 17 tasks
1
feat: allow bwa-mem to output sam format
#11457 opened May 1, 2026 by piplus2 Loading…
7 of 17 tasks
1
6
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
4
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
7
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
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