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Create tmp files_to_copy.tx avoiding error with write permissions in work directory #73

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Merged
delfiterradas merged 3 commits into from
Jul 30, 2026
Merged

Create tmp files_to_copy.tx avoiding error with write permissions in work directory #73

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65b7dfe
Create temp file avoiding errors with write permissions in workdir
delfiterradas Jul 30, 2026
790b8fe
Update CHANGELOG
delfiterradas Jul 30, 2026
05b139e
Fix linting
delfiterradas Jul 30, 2026
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -21,6 +21,8 @@ Initial release of nf-core/datasync, created with the [nf-core](https://nf-co.re

### `Fixed`

- [[#73](https://github.com/nf-core/datasync/pull/73)] - Create tmp `files_to_copy.tx` avoiding error with write permissions in work directory ([@delfiterradas](https://github.com/delfiterradas), review by [@atrigila](https://github.com/atrigila) and [@antoniasaracco](https://github.com/antoniasaracco)).

### `Dependencies`

### `Deprecated`
5 changes: 4 additions & 1 deletion workflows/datasync.nf
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Expand Up @@ -106,7 +106,10 @@ workflow DATASYNC {
.collect { it.readLines() }
.inject { a, b -> a.intersect(b) }

def copy_files = file("${workDir}/${meta.id}_files_to_copy.txt")
def copy_files = java.nio.file.Files.createTempFile(
"${meta.id}_files_to_copy_",
".txt"
)
copy_files.text = common.join('\n') + '\n'

tuple(meta, copy_files)
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