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10 changes: 10 additions & 0 deletions data/community/v-gen-lab/dengue/denv1/CHANGELOG.md
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## Unreleased

- 2026 Annual update: added new lineages to the classification system as determined by the scientific committee.
- Updated representative tree sequences to reduce assignment errors.
- Outgroup sequences are now labeled `unassigned` instead of `Outgroup`.
- Restored country coloring and the map using Pathoplexus country metadata where available.
- Most reference-tree tips now use Pathoplexus accessions (`PP_...`) as their identifiers.
- Corrected placement masks to match each serotype's GFF3 coding bounds and reference length.
- New lineages: 1V_A.1, 1V_A.2, 1V_D.1.4, 1V_F.1, 1V_F.2

## 2026-04-14T11:55:23Z

- Move `placementMaskRanges` to tree.json
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8 changes: 6 additions & 2 deletions data/community/v-gen-lab/dengue/denv1/README.md
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## Scope of This Dataset

This dataset is based on the dengue virus lineage system from [Hill V, Cleemput S, Pereira JS, et al., 2024](https://doi.org/10.1371/journal.pbio.3002834) and is suitable for the analysis of DENV-1 viral sequences. The systems are independent, so sequences from other serotypes may not be classified or may be assigned as "Outgroup."
This dataset is based on the dengue virus lineage system from [Hill V, Cleemput S, Pereira JS, et al., 2024](https://doi.org/10.1371/journal.pbio.3002834) and is suitable for the analysis of DENV-1 viral sequences. The systems are independent, so sequences from other serotypes may be reported as `unassigned`.

## Dengue Lineages System Project

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² University of São Paulo [(USP)](https://www5.usp.br/english/institutional/).

Read more about Nextclade datasets in the Nextclade documentation: [Nextclade Datasets](https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html).
Read more about Nextclade datasets in the Nextclade documentation: [Nextclade Datasets](https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html).

<!-- workflow:data-use:start -->
This dataset includes sequences obtained from [Pathoplexus](https://pathoplexus.org/), some of which are subject to Restricted-Use terms. Use and redistribution of these sequences must comply with the [Pathoplexus Data Use Terms](https://pathoplexus.org/about/terms-of-use/data-use-terms), including the applicable requirements for publications and preprints.
<!-- workflow:data-use:end -->
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