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Feat/pypangraph junctions#182

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feat/pypangraph-junctions
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Feat/pypangraph junctions#182
mmolari wants to merge 28 commits into
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feat/pypangraph-junctions

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@mmolari mmolari commented May 27, 2026

The aim of this PR is to add functionalities to PyPangraph to analyze core-genome junctions.

Core-genome junctions are defined as regions in the graph separated by two adjacent flanking core blocks.

The main additions of the PR adds:

  • a class BackboneJunctions that serves as the interface to functions for junction analysis
  • the method stats of this class, returning summary statistics for each junction.
  • the method positions that computed junction coordinates in genomes frames of reference.
  • the method sequences, that extracts from the graph unaligned sequences for each junction.
  • updates to the documentation

@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 12:39 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 13:15 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 13:24 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 15:03 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 20:35 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 27, 2026 21:23 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 28, 2026 08:36 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 28, 2026 09:25 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 28, 2026 09:45 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 29, 2026 07:35 — with GitHub Actions Inactive
@mmolari mmolari temporarily deployed to refs/pull/182/merge May 29, 2026 15:09 — with GitHub Actions Inactive
@mmolari mmolari deployed to refs/pull/182/merge May 29, 2026 16:45 — with GitHub Actions Active
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