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fix(filesystem): only apply MCP roots when no CLI directories are provided - #4014

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Will-hxw wants to merge 4 commits into
modelcontextprotocol:mainfrom
Will-hxw:fix/3929-roots-override
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fix(filesystem): only apply MCP roots when no CLI directories are provided#4014
Will-hxw wants to merge 4 commits into
modelcontextprotocol:mainfrom
Will-hxw:fix/3929-roots-override

fix(filesystem): guard roots/list_changed against CLI directory override

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