Add BioMCP — 27-tool bioinformatics MCP server

[SachinGawande2003]

BioMCP — Bioinformatics Model Context Protocol Server

GitHub: https://github.com/SachinGawande2003/biomcp

What is BioMCP?

BioMCP connects Claude to every major biological database and
state-of-the-art AI models through MCP. Researchers can search
PubMed, predict protein structures, find drug targets, query
clinical trials, and generate DNA sequences — all in natural
language.

Tools (27 total across 6 categories)

• 📚 Literature & NCBI — PubMed, Gene lookup, BLAST
• 🧪 Proteins & Structures — UniProt, AlphaFold, RCSB PDB
• 🔬 Pathways — KEGG, Reactome
• 💊 Drug Discovery — ChEMBL, Open Targets
• 🏥 Clinical — ClinicalTrials.gov
• 🤖 AI Models (NVIDIA NIM) — MIT Boltz-2, Arc Evo2-40B

Databases (16 total)

PubMed · NCBI Gene · BLAST · UniProt · AlphaFold DB ·
RCSB PDB · KEGG · Reactome · ChEMBL · Open Targets ·
Ensembl · ClinicalTrials.gov · Human Cell Atlas ·
NCBI GEO · OpenNeuro · NeuroVault

Key Features

• Async-first, fully non-blocking
• Rate limiting + TTL caching per API
• Exponential backoff retry logic
• Input validation before any network call
• Flagship multi-omics tool queries 7 databases in parallel

Installation

pip install biomcp

License

MIT

[olaservo]

Thanks for contributing to the MCP servers repo!

We've retired the third-party server list from the README in favor of the MCP Registry — see #3950 for context. The Official Integrations and Community Servers sections no longer exist in the README, so this PR no longer has a target.

Going forward, please publish your server to the MCP Registry using the quickstart guide:
https://github.com/modelcontextprotocol/registry/blob/main/docs/modelcontextprotocol-io/quickstart.mdx

That's where server discovery now happens. Thanks for building on MCP!

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Note: I'm working through the backlog with help from Claude Code to give everyone a prompt response.