SCHOOL WIKI

SCHOOL: Software for Clinical Health Omics Onocolgy Laboratories

School is a collection of genomics analysis workflows that are used for detecting single nucleotide variants (SNVs), insertions/deletions (indels), copy number variants (CNVs) and translocations from RNA and DNA sequencing. These workflows have been validated in a CLIA laboratory at UTSW

Repos

• SCHOOL
• Scripts
• DNA Nexus Applets and Workflows

Implementation

• Running School
  • With Nextflow on HPC
  • With DNANexus on Cloud
• Building Creating Docker Containers
  • Docker
  • Scripts Embedded in Docker
• Required Reference Data
  • DNA Reference
  • RNA Reference