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Public release number differences #142

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322bc75
Updated sample and sample set counts
jonbrenas May 30, 2026
9b6b9b8
Wrong sample numbers in Af1.1
jonbrenas Jun 1, 2026
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6 changes: 3 additions & 3 deletions docs/af1/af1.1.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
"source": [
"# Af1.1\n",
"\n",
"The **[Af1.1](af1.1): _Anopheles funestus_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 1138 mosquitoes.\n",
"The **[Af1.1](af1.1): _Anopheles funestus_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 2065 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af11-anopheles-funestus-data-resource/). \n",
"\n",
Expand Down Expand Up @@ -1262,9 +1262,9 @@
},
"environment": {
"kernel": "mgenv_7.2.0",
"name": "workbench-notebooks.m139",
"name": "workbench-notebooks.m141",
"type": "gcloud",
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139"
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141"
},
"kernelspec": {
"display_name": "Python (mgenv_7.2.0)",
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6 changes: 3 additions & 3 deletions docs/ag3/ag3.10.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -85,7 +85,7 @@
"source": [
"## Sample sets\n",
"\n",
"The samples included in `Ag3.10` have been organised into 6 sample sets. \n",
"The samples included in `Ag3.10` have been organised into 4 sample sets. \n",
"\n",
"Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above."
]
Expand Down Expand Up @@ -1037,9 +1037,9 @@
},
"environment": {
"kernel": "mgenv_7.2.0",
"name": "workbench-notebooks.m139",
"name": "workbench-notebooks.m141",
"type": "gcloud",
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139"
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141"
},
"kernelspec": {
"display_name": "Python (mgenv_7.2.0)",
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14 changes: 10 additions & 4 deletions docs/ag3/ag3.11.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -81,7 +81,7 @@
"source": [
"## Sample sets\n",
"\n",
"The samples included in `Ag3.11` have been organised into 6 sample sets. \n",
"The samples included in `Ag3.11` have been organised into 2 sample sets. \n",
"\n",
"Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above."
]
Expand Down Expand Up @@ -719,10 +719,16 @@
"name": "Ag3.0-intro.ipynb",
"provenance": []
},
"environment": {
"kernel": "mgenv_7.2.0",
"name": "workbench-notebooks.m141",
"type": "gcloud",
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141"
},
"kernelspec": {
"display_name": "global-global-mgenv-6.0.6",
"display_name": "Python (mgenv_7.2.0)",
"language": "python",
"name": "conda-env-global-global-mgenv-6.0.6-py"
"name": "mgenv_7.2.0"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -734,7 +740,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.7"
"version": "3.12.11"
}
},
"nbformat": 4,
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8 changes: 4 additions & 4 deletions docs/ag3/ag3.9.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
"source": [
"# Ag3.9\n",
"\n",
"The **[Ag3.9](Ag3.9): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 3639 mosquitoes.\n",
"The **[Ag3.9](Ag3.9): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 3571 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/ag39-anopheles-gambiae-data-resource). \n",
"\n",
Expand Down Expand Up @@ -90,7 +90,7 @@
"source": [
"## Sample sets\n",
"\n",
"The samples included in `Ag3.9` have been organised into 6 sample sets. \n",
"The samples included in `Ag3.9` have been organised into 10 sample sets. \n",
"\n",
"Each sample set corresponds to a set of mosquito specimens from a contributing study. Study details can be found in the partner studies webpages listed above."
]
Expand Down Expand Up @@ -1508,9 +1508,9 @@
},
"environment": {
"kernel": "mgenv_7.2.0",
"name": "workbench-notebooks.m139",
"name": "workbench-notebooks.m141",
"type": "gcloud",
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m139"
"uri": "us-docker.pkg.dev/deeplearning-platform-release/gcr.io/workbench-notebooks:m141"
},
"kernelspec": {
"display_name": "Python (mgenv_7.2.0)",
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