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1. public-statgen public-statgen Public

   Publicly available statistical genetics data and analysis. 1000G, HGDP, SGDP, and GIAB. Reproducible global ADMIXTURE with variable K.

   Python

2. ukbb-sbayesrc-gwas ukbb-sbayesrc-gwas Public

   Prepare SBayesRC SNP genotypes from UK Biobank DRAGEN WGS for GWAS with REGENIE on the Research Analysis Platform (DNAnexus).

   Shell

3. pan-ukbb-rg pan-ukbb-rg Public

   Compute one-vs-all LDSC genetic correlations across public Pan-UKBB EUR GWAS summary statistics.

   Python

4. aou-sbayesrc-gwas aou-sbayesrc-gwas Public

   Prepare SBayesRC SNP genotypes from All of Us DRAGEN WGS for GWAS with REGENIE on the Verily Workbench.

   Shell

5. roh-1000g-eur roh-1000g-eur Public

   Reproducible 1000G EUR runs-of-homozygosity reference pipeline with frozen hg38 marker panel, ROH summaries, percentiles, and example outputs.

   Python

6. rare-ptv-burden-reference rare-ptv-burden-reference Public

   Build a GRCh38 1000G EUR rare protein-truncating variant burden reference panel using LOFTEE, gnomAD v4.1, CADD v1.7, s_het, and optional GTEx CNS expression.

   Python