insightsengineering · llrs-roche · Sep 9, 2026 · Sep 9, 2026 · Sep 9, 2026 · Sep 9, 2026
diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md
@@ -130,7 +130,7 @@ The package maintainer also reserves the right to adjust the criteria to recogni
 If you have further questions regarding the contribution guidelines, please contact the package/repository maintainer.
 
 <!-- urls -->
-[docs]: https://insightsengineering.github.io/teal.slice/latest-tag/index.html
-[articles]: https://insightsengineering.github.io/teal.slice/latest-tag/articles/index.html
-[license]: https://insightsengineering.github.io/teal.slice/latest-tag/LICENSE-text.html
-[insights]: https://github.com/insightsengineering/teal.slice/pulse
+[docs]: https://pharmaverse.github.io/teal.slice/latest-tag/index.html
+[articles]: https://pharmaverse.github.io/teal.slice/latest-tag/articles/index.html
+[license]: https://pharmaverse.github.io/teal.slice/latest-tag/LICENSE-text.html
+[insights]: https://github.com/pharmaverse/teal.slice/pulse
diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml
@@ -33,23 +33,23 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://insightsengineering.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://insightsengineering.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
   - type: checkboxes
     id: security-policy
     attributes:
       label: Security Policy
-      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/insightsengineering/teal.slice/security/policy)
+      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.slice/security/policy)
       options:
         - label: I agree to follow this project's Security Policy.
           required: true
diff --git a/.github/ISSUE_TEMPLATE/feature.yml b/.github/ISSUE_TEMPLATE/feature.yml
@@ -13,23 +13,23 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://insightsengineering.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://insightsengineering.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
   - type: checkboxes
     id: security-policy
     attributes:
       label: Security Policy
-      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/insightsengineering/teal.slice/security/policy)
+      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.slice/security/policy)
       options:
         - label: I agree to follow this project's Security Policy.
           required: true
diff --git a/.github/ISSUE_TEMPLATE/question.yml b/.github/ISSUE_TEMPLATE/question.yml
@@ -13,23 +13,23 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://insightsengineering.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct.](https://pharmaverse.github.io/teal.slice/latest-tag/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://insightsengineering.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines.](https://pharmaverse.github.io/teal.slice/latest-tag/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
   - type: checkboxes
     id: security-policy
     attributes:
       label: Security Policy
-      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/insightsengineering/teal.slice/security/policy)
+      description: By submitting this issue, you agree to follow our [Security Policy.](https://github.com/pharmaverse/teal.slice/security/policy)
       options:
         - label: I agree to follow this project's Security Policy.
           required: true
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -29,10 +29,10 @@ repos:
           - shinycssloaders
           - shinyjs
           - shinyWidgets
-          - insightsengineering/teal.code
-          - insightsengineering/teal.data
-          - insightsengineering/teal.logger
-          - insightsengineering/teal.widgets
+          - pharmaverse/teal.code
+          - pharmaverse/teal.data
+          - pharmaverse/teal.logger
+          - pharmaverse/teal.widgets
       - id: spell-check
         name: Check spelling with `spelling`
         exclude: >

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -30,9 +30,9 @@ Description: Data filtering module for 'teal' applications.  Allows for
     'MultiAssayExperiment' objects. Also displays filtered and unfiltered
     observation counts.
 License: Apache License 2.0
-URL: https://insightsengineering.github.io/teal.slice/,
-    https://github.com/insightsengineering/teal.slice/
-BugReports: https://github.com/insightsengineering/teal.slice/issues
+URL: https://pharmaverse.github.io/teal.slice/,
+    https://github.com/pharmaverse/teal.slice/
+BugReports: https://github.com/pharmaverse/teal.slice/issues
 Depends:
     R (>= 4.0)
 Imports:
@@ -72,13 +72,13 @@ VignetteBuilder:
 Config/Needs/verdepcheck: rstudio/shiny, rstudio/bslib, mllg/checkmate,
     tidyverse/dplyr, rstudio/htmltools, jeroen/jsonlite, daroczig/logger,
     plotly/plotly, r-lib/R6, daattali/shinycssloaders, daattali/shinyjs,
-    dreamRs/shinyWidgets, insightsengineering/teal.data,
-    insightsengineering/teal.logger, insightsengineering/teal.widgets,
+    dreamRs/shinyWidgets, pharmaverse/teal.data,
+    pharmaverse/teal.logger, pharmaverse/teal.widgets,
     rstudio/DT, yihui/knitr, bioc::MultiAssayExperiment,
     bioc::SummarizedExperiment, rstudio/rmarkdown, r-lib/testthat,
     r-lib/withr, bioc::matrixStats
 Config/Needs/website: insightsengineering/nesttemplate
-Config/roxygen2/version: 8.0.0
+Config/roxygen2/version: 8.1.0
 Encoding: UTF-8
 Language: en-US
 LazyData: true

diff --git a/R/FilterStateDate.R b/R/FilterStateDate.R
@@ -116,7 +116,6 @@ DateFilterState <- R6::R6Class( # nolint
   # public methods ----
 
   public = list(
-
     #' @description
     #' Initialize a `FilterState` object.
     #'
@@ -251,7 +250,7 @@ DateFilterState <- R6::R6Class( # nolint
     },
     remove_out_of_bounds_values = function(values) {
       choices <- private$get_choices()
-      if (values[1] < choices[1L] | values[1] > choices[2L]) {
+      if (values[1] < choices[1L] || values[1] > choices[2L]) {
         warning(
           sprintf(
             "Value: %s is outside of the possible range for column %s of dataset %s, setting minimum possible value.",
@@ -261,7 +260,7 @@ DateFilterState <- R6::R6Class( # nolint
         values[1] <- choices[1L]
       }
 
-      if (values[2] > choices[2L] | values[2] < choices[1L]) {
+      if (values[2] > choices[2L] || values[2] < choices[1L]) {
         warning(
           sprintf(
             "Value: %s is outside of the possible range for column %s of dataset %s, setting maximum possible value.",

diff --git a/R/FilterStateDatettime.R b/R/FilterStateDatettime.R
@@ -122,7 +122,6 @@ DatetimeFilterState <- R6::R6Class( # nolint
   # public methods ----
 
   public = list(
-
     #' @description
     #' Initialize a `FilterState` object. This class
     #' has an extra field, `private$timezone`, which is set to `Sys.timezone()` by
@@ -297,7 +296,7 @@ DatetimeFilterState <- R6::R6Class( # nolint
         values[1] <- choices[1L]
       }
 
-      if (values[2] > choices[2L] | values[2] < choices[1L]) {
+      if (values[2] > choices[2L] || values[2] < choices[1L]) {
         warning(
           sprintf(
             "Value: '%s' is outside of the range for the column '%s' in dataset '%s', setting maximum possible value.",

diff --git a/R/FilterStateEmpty.R b/R/FilterStateEmpty.R
@@ -31,7 +31,6 @@ EmptyFilterState <- R6::R6Class( # nolint
 
   # public methods ----
   public = list(
-
     #' @description
     #' Initialize `EmptyFilterState` object.
     #'

diff --git a/R/FilterStateLogical.R b/R/FilterStateLogical.R
@@ -101,7 +101,6 @@ LogicalFilterState <- R6::R6Class( # nolint
 
   # public methods ----
   public = list(
-
     #' @description
     #' Initialize a `FilterState` object.
     #'

diff --git a/R/FilteredDatasetDataframe.R b/R/FilteredDatasetDataframe.R
@@ -37,7 +37,6 @@ DataframeFilteredDataset <- R6::R6Class( # nolint
 
   # public fields ----
   public = list(
-
     #' @description
     #' Initializes this `DataframeFilteredDataset` object.
     #'

diff --git a/R/FilteredDatasetDefault.R b/R/FilteredDatasetDefault.R
@@ -24,7 +24,6 @@ DefaultFilteredDataset <- R6::R6Class( # nolint
 
   # public methods ----
   public = list(
-
     #' @description
     #' Initializes this `DefaultFilteredDataset` object.
     #'

diff --git a/R/teal_slices.R b/R/teal_slices.R
@@ -19,7 +19,7 @@
 #'  specify which variables are allowed to be filtered; see `Details`.
 #' @param count_type
 #' _This is a new feature. Do kindly share your opinions on
-#' [`teal.slice`'s GitHub repository](https://github.com/insightsengineering/teal.slice/)._
+#' [`teal.slice`'s GitHub repository](https://github.com/pharmaverse/teal.slice/)._
 #'
 #'  (`character(1)`) string specifying how observations are tallied by these filter states.
 #'  Possible options:

diff --git a/R/utils.R b/R/utils.R
@@ -64,7 +64,6 @@ make_c_call <- function(choices) {
 }
 
 
-
 #' Encodes ids to be used in JavaScript and Shiny
 #'
 #' @description

diff --git a/README.md b/README.md
@@ -6,22 +6,22 @@
 [![Last Month Downloads](http://cranlogs.r-pkg.org/badges/last-month/teal.slice?color=green)](https://cran.r-project.org/package=teal.slice)
 [![Last Week Downloads](http://cranlogs.r-pkg.org/badges/last-week/teal.slice?color=green)](https://cran.r-project.org/package=teal.slice)
 
-[![Check 🛠](https://github.com/insightsengineering/teal.slice/actions/workflows/check.yaml/badge.svg)](https://insightsengineering.github.io/teal.slice/main/unit-test-report/)
-[![Docs 📚](https://github.com/insightsengineering/teal.slice/actions/workflows/docs.yaml/badge.svg)](https://insightsengineering.github.io/teal.slice/)
-[![Code Coverage 📔](https://raw.githubusercontent.com/insightsengineering/teal.slice/_xml_coverage_reports/data/main/badge.svg)](https://insightsengineering.github.io/teal.slice/main/coverage-report/)
-
-![GitHub forks](https://img.shields.io/github/forks/insightsengineering/teal.slice?style=social)
-![GitHub repo stars](https://img.shields.io/github/stars/insightsengineering/teal.slice?style=social)
-
-![GitHub commit activity](https://img.shields.io/github/commit-activity/m/insightsengineering/teal.slice)
-![GitHub contributors](https://img.shields.io/github/contributors/insightsengineering/teal.slice)
-![GitHub last commit](https://img.shields.io/github/last-commit/insightsengineering/teal.slice)
-![GitHub pull requests](https://img.shields.io/github/issues-pr/insightsengineering/teal.slice)
-![GitHub repo size](https://img.shields.io/github/repo-size/insightsengineering/teal.slice)
-![GitHub language count](https://img.shields.io/github/languages/count/insightsengineering/teal.slice)
+[![Check 🛠](https://github.com/pharmaverse/teal.slice/actions/workflows/check.yaml/badge.svg)](https://pharmaverse.github.io/teal.slice/main/unit-test-report/)
+[![Docs 📚](https://github.com/pharmaverse/teal.slice/actions/workflows/docs.yaml/badge.svg)](https://pharmaverse.github.io/teal.slice/)
+[![Code Coverage 📔](https://raw.githubusercontent.com/pharmaverse/teal.slice/_xml_coverage_reports/data/main/badge.svg)](https://pharmaverse.github.io/teal.slice/main/coverage-report/)
+
+![GitHub forks](https://img.shields.io/github/forks/pharmaverse/teal.slice?style=social)
+![GitHub repo stars](https://img.shields.io/github/stars/pharmaverse/teal.slice?style=social)
+
+![GitHub commit activity](https://img.shields.io/github/commit-activity/m/pharmaverse/teal.slice)
+![GitHub contributors](https://img.shields.io/github/contributors/pharmaverse/teal.slice)
+![GitHub last commit](https://img.shields.io/github/last-commit/pharmaverse/teal.slice)
+![GitHub pull requests](https://img.shields.io/github/issues-pr/pharmaverse/teal.slice)
+![GitHub repo size](https://img.shields.io/github/repo-size/pharmaverse/teal.slice)
+![GitHub language count](https://img.shields.io/github/languages/count/pharmaverse/teal.slice)
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
-[![Current Version](https://img.shields.io/github/r-package/v/insightsengineering/teal.slice/main?color=purple\&label=package%20version)](https://github.com/insightsengineering/teal.slice/tree/main)
-[![Open Issues](https://img.shields.io/github/issues-raw/insightsengineering/teal.slice?color=red\&label=open%20issues)](https://github.com/insightsengineering/teal.slice/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc)
+[![Current Version](https://img.shields.io/github/r-package/v/pharmaverse/teal.slice/main?color=purple\&label=package%20version)](https://github.com/pharmaverse/teal.slice/tree/main)
+[![Open Issues](https://img.shields.io/github/issues-raw/pharmaverse/teal.slice?color=red\&label=open%20issues)](https://github.com/pharmaverse/teal.slice/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc)
 <!-- end badges -->
 
 `teal.slice` is an `R` library used in the development of `teal` `shiny` modules. It provides:
@@ -40,14 +40,14 @@ Alternatively, you might want to use the development version.
 
 ```r
 # install.packages("pak")
-pak::pak("insightsengineering/teal.slice")
+pak::pak("pharmaverse/teal.slice")
 ```
 
 ## Usage
 
-To understand how to use this package, please refer to the [Introduction to `teal.slice`](https://insightsengineering.github.io/teal.slice/latest-tag/articles/teal-slice.html) article, which provides multiple examples of code implementation.
+To understand how to use this package, please refer to the [Introduction to `teal.slice`](https://pharmaverse.github.io/teal.slice/latest-tag/articles/teal-slice.html) article, which provides multiple examples of code implementation.
 
-![Showcase](https://github.com/insightsengineering/teal.slice/blob/main/assets/img/showcase.gif)
+![Showcase](https://github.com/pharmaverse/teal.slice/blob/main/assets/img/showcase.gif)
 
 ## Getting help
 

diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -1,5 +1,5 @@
 ---
-url: https://insightsengineering.github.io/teal.slice
+url: https://pharmaverse.github.io/teal.slice
 
 template:
   package: nesttemplate
@@ -20,7 +20,7 @@ navbar:
           href: unit-test-report-non-cran/
     github:
       icon: fa-github
-      href: https://github.com/insightsengineering/teal.slice
+      href: https://github.com/pharmaverse/teal.slice
 
 reference:
   - title: "`teal` filter-panel API"

diff --git a/man/teal.slice-package.Rd b/man/teal.slice-package.Rd
diff --git a/man/teal_slices.Rd b/man/teal_slices.Rd
diff --git a/staged_dependencies.yaml b/staged_dependencies.yaml
@@ -1,20 +1,20 @@
 ---
 current_repo:
-  repo: insightsengineering/teal.slice
+  repo: pharmaverse/teal.slice
   host: https://github.com
 upstream_repos:
-  insightsengineering/teal.logger:
-    repo: insightsengineering/teal.logger
+  pharmaverse/teal.logger:
+    repo: pharmaverse/teal.logger
     host: https://github.com
-  insightsengineering/teal.widgets:
-    repo: insightsengineering/teal.widgets
+  pharmaverse/teal.widgets:
+    repo: pharmaverse/teal.widgets
     host: https://github.com
-  insightsengineering/teal.data:
-    repo: insightsengineering/teal.data
+  pharmaverse/teal.data:
+    repo: pharmaverse/teal.data
     host: https://github.com
 downstream_repos:
-  insightsengineering/teal:
-    repo: insightsengineering/teal
+  pharmaverse/teal:
+    repo: pharmaverse/teal
     host: https://github.com
   insightsengineering/teal.modules.general:
     repo: insightsengineering/teal.modules.general

diff --git a/tests/testthat/test-filter_panel_api.R b/tests/testthat/test-filter_panel_api.R
@@ -119,7 +119,6 @@ testthat::test_that("FilterPanelAPI$clear_filter_states remove the filters of th
 })
 
 
-
 # WRAPPER FUNCTIONS ----
 # get_filter_state ----
 testthat::test_that("get_filter_state returns `teal_slices` with features identical to those in input", {
-Original file line number
+Diff line change
@@ Expand Up / @@ -64,7 +64,6 @@ make_c_call <- function(choices) { @@
     }
     #' Encodes ids to be used in JavaScript and Shiny
     #'
     #' @description
@@ Expand Down @@