GitHub - htruscott/SegmenterProcessing

Name		Name	Last commit message	Last commit date
.vscode		.vscode
__pycache__		__pycache__
associations		associations
centersfitting		centersfitting
gcloud		gcloud
gcp_transfer_folder/nd/2023.6.1 OptoTiam Exp 64		gcp_transfer_folder/nd/2023.6.1 OptoTiam Exp 64
gradient		gradient
gradients		gradients
in		in
output_files		output_files
plotly_testscraps		plotly_testscraps
scraps		scraps
utils		utils
ziptesting		ziptesting
.gitignore		.gitignore
FMI_from_manual_tracks.py		FMI_from_manual_tracks.py
FMI_from_tracks.py		FMI_from_tracks.py
PRW_model_functions.py		PRW_model_functions.py
Post-war.tif		Post-war.tif
Post-warp.tif		Post-warp.tif
Pre-warp.tif		Pre-warp.tif
Pre_warp.tif		Pre_warp.tif
Pre_warp_clipped.tif		Pre_warp_clipped.tif
Signature.java		Signature.java
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
VASP_frame.tif		VASP_frame.tif
VSI_to_tiff_macro.ijm		VSI_to_tiff_macro.ijm
add_image_adjacents.py		add_image_adjacents.py
alignment.py		alignment.py
allcenters.mp4		allcenters.mp4
analyze_experiment.py		analyze_experiment.py
analyze_track.py		analyze_track.py
anim.mp4		anim.mp4
annotate_movie.py		annotate_movie.py
appmed_only.mp4		appmed_only.mp4
assoc_results_53.txt		assoc_results_53.txt
astro.png		astro.png
cell1_01.tif		cell1_01.tif
cell1_01.vsi		cell1_01.vsi
cell2_02.vsi		cell2_02.vsi
cell7.tif		cell7.tif
cell_example.py		cell_example.py
cell_tracking.py		cell_tracking.py
cell_tracking_old.py		cell_tracking_old.py
center_fitting_tests.py		center_fitting_tests.py
centroidtracker.py		centroidtracker.py
centroidtracker_old.py		centroidtracker_old.py
change_basename.py		change_basename.py
charttest.py		charttest.py
checkpoint_test.py		checkpoint_test.py
click_test.ahk		click_test.ahk
compare_remainders.py		compare_remainders.py
compare_tracks.py		compare_tracks.py
compute_mIoU.py		compute_mIoU.py
copy_images.py		copy_images.py
copy_immask_pair.py		copy_immask_pair.py
data_viewer.ipynb		data_viewer.ipynb
dataformatter.py		dataformatter.py
diagonal.png		diagonal.png
divergentcolor.py		divergentcolor.py
dotscopy.py		dotscopy.py
double_video_framerate.py		double_video_framerate.py
draw_ROIs.py		draw_ROIs.py
draw_ROIs_silly.py		draw_ROIs_silly.py
dt3.py		dt3.py
dtest.py		dtest.py
favicon.ico		favicon.ico
fetch_images.py		fetch_images.py
filegetter.py		filegetter.py
filter_testing.ipynb		filter_testing.ipynb
final_frame.py		final_frame.py
finally_contours_combined.tif		finally_contours_combined.tif
find_gradient.py		find_gradient.py
fit_gradients.py		fit_gradients.py
fix_names.py		fix_names.py
focal_image.png		focal_image.png
focal_image_rot.png		focal_image_rot.png
focal_image_trim.png		focal_image_trim.png
focal_image_trim_twoangle.png		focal_image_trim_twoangle.png
focal_image_vertical_only.png		focal_image_vertical_only.png
fourier.py		fourier.py
frame1.tif		frame1.tif
gcp_test.py		gcp_test.py
gradient_fix_alignment.ipynb		gradient_fix_alignment.ipynb
gradient_fix_alignment.py		gradient_fix_alignment.py
graph_focus.py		graph_focus.py
highlight_tracked_cell.py		highlight_tracked_cell.py
honorsthesis_FMI_data.py		honorsthesis_FMI_data.py
icon.png		icon.png
image_annotations.py		image_annotations.py
image_annotations__preprocessed__.py		image_annotations__preprocessed__.py
index.txt		index.txt
inspect_stage_focus.py		inspect_stage_focus.py
invert_mask.py		invert_mask.py
java_log.txt		java_log.txt
kymograph.py		kymograph.py
libczi.py		libczi.py
make_fmi_plots.py		make_fmi_plots.py
make_protrusion_deltaimage.py		make_protrusion_deltaimage.py

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