Hello！When performing gene-level transcriptome quantification using StringTie/2.1.4 (with a reference genome), are BAM files generated by upstream Hisat2/2.2.1 (with the --dta-cufflinks parameter used) compatible?
I would be very grateful for your guidance！
Hello！When performing gene-level transcriptome quantification using StringTie/2.1.4 (with a reference genome), are BAM files generated by upstream Hisat2/2.2.1 (with the --dta-cufflinks parameter used) compatible?
I would be very grateful for your guidance！