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plassembler long passes wrong commands to canu for pacbio-hifi

Status: Open.

#84 In gbouras13/plassembler;

· Kincekara opened on Jun 16, 2026

Unicycler crashes when using '--spades_options' and not using '--unicycler_options'

Status: Open.

#83 In gbouras13/plassembler;

· pdobbler opened on May 22, 2026

Question Regarding Plasmid Copy Number Calculation

Status: Open.

#71 In gbouras13/plassembler;

· cici-Jing opened on Jun 24, 2025

Update PLSDB version to include archaeal plasmids

enhancementNew feature or requestNew feature or request

Status: Open.

#62 In gbouras13/plassembler;

· richardstoeckl opened on May 13, 2025

.gfa output file not a typical gfa format

Status: Open.

#56 In gbouras13/plassembler;

· Kir283 opened on Oct 17, 2024

Two chromosome contigs in Klebsiella pneumoniae 'chromosome.fasta' file

Status: Open.

#55 In gbouras13/plassembler;

· ayoraind opened on Sep 23, 2024

extra dependencies :: canu, dnaapler forgotten

Status: Open.

#54 In gbouras13/plassembler;

· EricDeveaud opened on Jul 12, 2024

Plassembler stops at Processing Sam/Bam Files and extracting Fastqs

bugSomething isn't workingSomething isn't working

Status: Open.

#53 In gbouras13/plassembler;

· ayoraind opened on May 13, 2024

Coverage stats in output

Status: Open.

#51 In gbouras13/plassembler;

· CorentinEscobar opened on Mar 13, 2024

Multiple chromosomes - combined reference for even copy number distribution

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In gbouras13/plassembler;

· gbouras13 opened on Jun 2, 2023